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List of works by Francesco Strozzi

A Ruby API to query the Ensembl database for genomic features

scientific article

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

scientific article published on 03 July 2019

A unified catalog of 204,938 reference genomes from the human gut microbiome

scientific article published on 20 July 2020

A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach

scientific article

Analysis of Gene Expression in White Blood Cells of Cattle Orally Challenged with Bovine Amyloidotic Spongiform Encephalopathy

article

Annotation of 390 bovine miRNA genes by sequence similarity with other species

scientific article

Application of meta-omics techniques to understand greenhouse gas emissions originating from ruminal metabolism

scientific article published on 16 January 2017

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

scientific article

Blockage of bacterial FimH prevents mucosal inflammation associated with Crohn's disease

scientific article published on 23 August 2021

Common bean (Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency.

scientific article

Community-driven development for computational biology at Sprints, Hackathons and Codefests

scientific article

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

scientific article (publication date: August 2013)

Distinct lncRNA transcriptional fingerprints characterize progressive stages of multiple myeloma.

scientific article

Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis

scientific article

Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley

scientific article published on 27 June 2019

Expression of genes involved in the T cell signalling pathway in circulating immune cells of cattle 24 months following oral challenge with Bovine Amyloidotic Spongiform Encephalopathy (BASE).

scientific article published on 9 May 2015

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

scientific article published on 13 June 2016

Genetic loci involved in antibody response to Mycobacterium avium ssp. paratuberculosis in cattle

scientific article

Johne's disease in cattle: an in vitro model to study early response to infection of Mycobacterium avium subsp. paratuberculosis using RNA-seq

scientific article published on 5 October 2017

Meta-analysis of two genome-wide association studies of bovine paratuberculosis

scientific article (publication date: 2012)

Pipengine: an ultra light YAML-based pipeline execution engine

scientific article published on 30 August 2017

Profiling bovine blastocyst microRNAs using deep sequencing

scientific article

QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize

scientific article

RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

scientific article published on 27 January 2016

Response of the goat mammary gland to infection with Staphylococcus aureus revealed by gene expression profiling in milk somatic and white blood cells

scientific article

SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock

scientific article published on 11 February 2014

Scalable Workflows and Reproducible Data Analysis for Genomics

scientific article published on 01 January 2019

The Possible Innovative Use of Bifidobacterium longum W11 in Association With Rifaximin: A New Horizon for Combined Approach?

scientific article published on November 2016

The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species

scientific article

The ruminal microbiome associated with methane emissions from ruminant livestock

scientific article published on 19 January 2017

Transcript profiling of common bean nodules subjected to oxidative stress.

scientific article published on 28 March 2013

Transcriptome analysis of Pseudomonas mediterranea and P. corrugata plant pathogens during accumulation of medium-chain-length PHAs by glycerol bioconversion

scientific article published on 18 July 2016

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