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List of works by John Deck

A High-throughput Data Ingest Pipeline for Semantic Data-stores

scientific article published in 2017

A call for an international network of genomic observatories (GOs)

scientific article

A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data

scientific article published in 2022

An Update on the Plant Phenology Ontology and Plant Phenology Data Integration

scientific article published in 2017

Best Practices for Aggregating and Reporting Individual Traits

scientific article published in 2021

Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research

scientific article published on 08 October 2020

Clarifying concepts and terms in biodiversity informatics

scientific article

Community next steps for making globally unique identifiers work for biocollections data

scientific article

Darwin Core List of Terms ⬇️

lists all terms in namespaces currently used in the Darwin Core vocabulary

Darwin Core RDF Guide ⬇️

facilitates the use of Darwin Core terms in the Resource Description Framework (RDF)

Field information management systems for DNA barcoding

scientific article

From Field Observations and Plant Specimens to a Trans-continental Knowledge Base: Efficient, semantically rich integration of highly heterogeneous plant phenological data

scientific article published on 2 July 2019

FuTRES: Functional Trait Resource for Environmental Studies

scientific article published on 18 June 2019

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article (publication date: 20 March 2017)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article

Importance of timely metadata curation to the global surveillance of genetic diversity

scientific article published in 2023

Integrating herbarium specimen observations into global phenology data systems

scientific article published on 07 March 2019

Internet of Samples

scientific article published on 17 October 2021

Internet of Samples: Progress report

scientific article published in 2021

Lessons learned from adapting the Darwin Core vocabulary standard for use in RDF

scholarly article

Meeting Report: GBIF hackathon-workshop on Darwin Core and sample data (22-24 May 2013)

scientific article

Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012)

scientific article

Meeting report: Identifying practical applications of ontologies for biodiversity informatics.

scientific article published on 17 May 2015

Meeting report: advancing practical applications of biodiversity ontologies

scientific article

Metadata preservation and stewardship for genomic data is possible, but must happen now

preprint published on 15 September 2022

Planning for Field Based Biological Sample Collection: Using the Genomic Observatories Metadatabase Project Interface

scientific article published in 2018

RCN4GSC Meeting Report: Initiating a Testbed for Managing Data at the Interface of Biodiversity and Genomics/Metagenomics, May 2011 ⬇️

scientific article published on September 28, 2012

Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012

scientific article

Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies

scientific article

Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium

scientific article

The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web

scientific article

The Genomic Observatories Metadatabase

scientific article published in 2017

The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples

scientific article

The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data.

scientific article

The effect of urbanization on plant phenology depends on regional temperature

scientific article published on 11 November 2019

The founding charter of the Genomic Observatories Network

scientific article published on 7 March 2014

The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices

scientific article (publication date: 2014)

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