Search filters

List of works by Bernard Moret

A Fast and Exact Algorithm for the Exemplar Breakpoint Distance.

scientific article published on 8 March 2016

A linear-time algorithm for computing inversion distance between signed permutations with an experimental study.

scientific article published in January 2001

A maximum-likelihood approach for building cell-type trees by lifting

scientific article published on 11 January 2016

A metric for phylogenetic trees based on matching.

scientific article published in July 2012

A new genomic evolutionary model for rearrangements, duplications, and losses that applies across eukaryotes and prokaryotes.

scientific article

A transcript perspective on evolution.

scientific article published in November 2013

Advances in phylogeny reconstruction from gene order and content data

scientific article published in January 2005

An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes

scientific article published on 17 December 2014

An Exact Characterization of Greedy Structures

An empirical analysis of algorithms for constructing a minimum spanning tree

scholarly article

Bootstrapping phylogenies inferred from rearrangement data.

scientific article

ChIPnorm: a statistical method for normalizing and identifying differential regions in histone modification ChIP-seq libraries.

scientific article

Comparing genomes with rearrangements and segmental duplications

scientific article

Constructive complexity

Distance-based genome rearrangement phylogeny

scientific article published on 4 October 2006

Efficiently computing the Robinson-Foulds metric.

scientific article published in July 2007

Estimating true evolutionary distances under rearrangements, duplications, and losses

scientific article

Estimating true evolutionary distances under the DCJ model

scientific article

Evaluating synteny for improved comparative studies

scientific article published on June 2014

Fast and accurate phylogenetic reconstruction from high-resolution whole-genome data and a novel robustness estimator.

scientific article

Fast phylogenetic methods for the analysis of genome rearrangement data: an empirical study

scientific article

Finding an Optimal Inversion Median: Experimental Results

FluReF, an automated flu virus reassortment finder based on phylogenetic trees.

scientific article

Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat.

scientific article

Heuristics for the inversion median problem.

scientific article

How many bootstrap replicates are necessary?

scientific article published in March 2010

Hurdles and sorting by inversions: combinatorial, statistical, and experimental results.

scientific article published in October 2009

Inferring transcript phylogenies ⬇️

scientific article published on June 11, 2012

Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data

article

Inversion-based genomic signatures.

scientific article

Local and Systemic Effects of Brassinosteroid Perception in Developing Phloem

scientific article published on 18 March 2020

Local auxin competition explains fragmented differentiation patterns

scientific article published on 11 June 2020

Maximum independent sets of commuting and noninterfering inversions

scientific article

Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes.

scientific article

NEMo: An Evolutionary Model With Modularity for PPI Networks

scientific article published on 19 January 2017

NETGEN: generating phylogenetic networks with diploid hybrids.

scientific article published on 22 May 2006

New Genome Similarity Measures based on Conserved Gene Adjacencies

scientific article published on June 2017

On Computing Breakpoint Distances for Genomes with Duplicate Genes

scientific article

Phylogenetic networks: modeling, reconstructibility, and accuracy

scientific article published in January 2004

Probabilistic partitioning methods to find significant patterns in ChIP-Seq data

scientific article

Refining regulatory networks through phylogenetic transfer of information.

scientific article published in July 2012

Refining transcriptional regulatory networks using network evolutionary models and gene histories

scientific article published on 4 January 2010

Scaling up accurate phylogenetic reconstruction from gene-order data

scientific article

Sequence-Based Synteny Analysis of Multiple Large Genomes

scientific article published in January 2018

Sorting genomes with rearrangements and segmental duplications through trajectory graphs.

scientific article

Sorting signed permutations by inversions in O(nlogn) time

scientific article published on March 2010

Study of cell differentiation by phylogenetic analysis using histone modification data

scientific article

TIBA: a tool for phylogeny inference from rearrangement data with bootstrap analysis

scientific article

The accuracy of fast phylogenetic methods for large datasets

scientific article published on 01 January 2002

Towards the development of computational tools for evaluating phylogenetic network reconstruction methods.

scientific article published in January 2003

Uncovering hidden phylogenetic consensus in large data sets.

scientific article

Paulina is supported by:

About Paulina

Help