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List of works by Pierre-Alain Binz

5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame

scientific article

6th HUPO Annual World Congress - Proteomics Standards Initiative Workshop 6-10 October 2007, Seoul, Korea

scientific article published in April 2008

A clinical molecular scanner to study human proteome complexity

scientific article published on 01 January 2000

A new rat model of creatine transporter deficiency reveals behavioral disorder and altered brain metabolism

scientific article published on 15 January 2021

A simple workflow to increase MS2 identification rate by subsequent spectral library search

scientific article

A standardized framing for reporting protein identifications in mzIdentML 1.2

scientific article

Annual spring meeting of the Proteomics Standards Initiative

scientific article published in October 2009

Annual spring meeting of the Proteomics Standards Initiative 23-25 April 2008, Toledo, Spain

scientific article published in October 2008

Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase

scientific article

Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4–6, 2005

article

Challenges in mass spectrometry

scientific article published in July 2002

Conference Report: The ESF Programme on Integrated Approaches for Functional Genomics. Workshop on 'Data Integration in Functional Genomics and Proteomics'

scientific article (publication date: 2002)

Controlled vocabularies and ontologies in proteomics: overview, principles and practice

scientific article

Development of data representation standards by the human proteome organization proteomics standards initiative

scientific article

ESF workshop on 'Sustainability and Governance of Web and GRID Resources in Functional Genomics'.

scientific article published on January 2005

Entering the Implementation Era A report on the HUPO-PSI Fall workshop 25–27 September 2006, Washington DC, USA

scholarly article by Sandra Orchard published in February 2007

Expanding the use of spectral libraries in proteomics

Exploring glycopeptide-resistance in Staphylococcus aureus: a combined proteomics and transcriptomics approach for the identification of resistance-related markers.

scientific article published on 22 November 2006

Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France

scientific article

From proteomics data representation to public data flow: a report on the HUPO-PSI workshop September 2011, Geneva, Switzerland

scientific article published on February 2012

Functional specifications of an integrated proteomics information management and analysis platform.

scientific article

Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25-27(th) October, 2004.

scientific article published in February 2005

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

scientific article

Gold coating of non-conductive membranes before matrix-assisted laser desorption/ionization tandem mass spectrometric analysis prevents charging effect

scientific article

Guidelines for reporting quantitative mass spectrometry based experiments in proteomics.

scientific article published on 14 March 2013

Guidelines for reporting the use of gel electrophoresis in proteomics.

scientific article

Guidelines for reporting the use of gel image informatics in proteomics

scientific article published on 01 July 2010

Guidelines for reporting the use of mass spectrometry in proteomics.

scientific article

Guidelines for reporting the use of mass spectrometry informatics in proteomics.

scientific article

High-throughput mass spectrometric discovery of protein post-translational modifications.

scientific article

Implementing data standards: a report on the HUPOPSI workshop September 2009, Toronto, Canada

scientific article published in May 2010

Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection

article

Internet Resources for Protein Identification and Characterization

MSight: an image analysis software for liquid chromatography-mass spectrometry

scientific article

Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands

scientific article published in February 2009

Mass spectrometry-based proteomics: current status and potential use in clinical chemistry

scientific article published on December 2003

Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany

scientific article published on 9 October 2014

Method for identification and quantitative analysis of protein lysine methylation using matrix-assisted laser desorption/ionization--time-of-flight mass spectrometry and amino acid analysis

scientific article published on 01 April 1999

Molecular scanner experiment with human plasma: improving protein identification by using intensity distributions of matching peptide masses

scientific article

New perspectives in the Escherichia coli proteome investigation

scientific article published on 01 March 2001

On the benefits of acquiring peptide fragment ions at high measured mass accuracy

scientific article published on 4 March 2008

Peptide mass fingerprinting peak intensity prediction: extracting knowledge from spectra

scientific article

Preparing to work with big data in proteomics - a report on the HUPO-PSI Spring Workshop: April 15-17, 2013, Liverpool, UK.

scientific article published in October 2013

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

scientific article (publication date: August 2008)

Proteome Analysis

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

scientific article (publication date: March 2014)

Proteomics Standards Initiative Extended FASTA Format

scientific article published on 23 May 2019

Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms

scientific article published on 15 March 2022

Proteomics application exercise of the Swiss Proteomics Society: Report of the SPS'02 session

article

Second Joint HUPO publication and Proteomics Standards Initiative workshop

scientific article published on October 2009

Semisynthetic sensor proteins enable metabolic assays at the point of care

scientific article

Standard guidelines for the chromosome-centric human proteome project

scientific article published on 26 March 2012

Ten years of standardizing proteomic data: a report on the HUPO-PSI Spring Workshop: April 12-14th, 2012, San Diego, USA

scientific article (publication date: September 2012)

The ESF Programme on Functional Genomics Workshop on 'Data Integration in Functional Genomics: Application to Biological Pathways'.

scientific article

The HUPO pre-congress Proteomics Standards Initiative workshop. HUPO 5th annual World Congress. Long Beach, CA, USA 28 October-1 November 2006.

scientific article published in April 2007

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

scientific article (publication date: 2013)

The Make 2D-DB II package: conversion of federated two-dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases

scientific article

The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative

scientific article published in January 2014

The PSI-MOD community standard for representation of protein modification data.

scientific article

The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

scientific article

The molecular scanner: concept and developments

scientific article published in February 2004

The mouse SWISS-2D PAGE database: a tool for proteomics study of diabetes and obesity

article

The mouse SWISS-2D PAGE database: a tool for proteomics study of diabetes and obesity

scientific article published on 01 January 2001

The mzIdentML data standard for mass spectrometry-based proteomics results

scientific article (publication date: July 2012)

Toward a Clinical Molecular Scanner for Proteome Research: Parallel Protein Chemical Processing before and during Western Blot

scientific article published on 01 November 1999

TraML--a standard format for exchange of selected reaction monitoring transition lists

scientific article published on 12 December 2011

Universal Spectrum Identifier for mass spectra

scientific article published on 28 June 2021

X-Rank: a robust algorithm for small molecule identification using tandem mass spectrometry

scientific article

mzML--a community standard for mass spectrometry data

2011 scientific article

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