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List of works by Mark Ivanov

A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics

publication published on 13 May 2022

Adaptation of Decoy Fusion Strategy for Existing Multi-Stage Search Workflows

scientific article published on 27 June 2016

Biosaur: An open‐source Python software for liquid chromatography–mass spectrometry peptide feature detection with ion mobility support

scientific article published in 2021

Brain Proteome of Drosophila melanogaster Is Enriched with Nuclear Proteins

scientific article published on 01 January 2019

Breath analysis in real time by mass spectrometry in chronic obstructive pulmonary disease.

scientific article

Brute-Force Approach for Mass Spectrometry-Based Variant Peptide Identification in Proteogenomics without Personalized Genomic Data.

scientific article published on 3 January 2018

Comparative evaluation of label-free quantification methods for shotgun proteomics

scientific article published on 18 January 2017

Comparative proteomics as a tool for identifying specific alterations within interferon response pathways in human glioblastoma multiforme cells.

scientific article published on 29 November 2017

Comparison of False Discovery Rate Control Strategies for Variant Peptide Identifications in Shotgun Proteogenomics

scientific article

Depletion of human serum albumin in embryo culture media for in vitro fertilization using monolithic columns with immobilized antibodies.

scientific article published on 28 April 2016

DirectMS1: MS/MS-Free Identification of 1000 Proteins of Cellular Proteomes in 5 Minutes

scientific article published on 05 March 2020

DirectMS1Quant: Ultrafast Quantitative Proteomics with MS/MS-Free Mass Spectrometry

scientific article published in 2022

Empirical multidimensional space for scoring peptide spectrum matches in shotgun proteomics.

scientific article published on 13 March 2014

Exome-based proteogenomics of HEK-293 human cell line: Coding genomic variants identified at the level of shotgun proteome.

scientific article published on 28 May 2016

Exome-driven characterization of the cancer cell lines at the proteome level: the NCI-60 case study.

scientific article

IdentiPy: an extensible search engine for protein identification in shotgun proteomics.

scientific article published on 23 April 2018

Identification of Single Amino Acid Substitutions in Proteogenomics.

scientific article published in March 2018

MS/MS-Free Protein Identification in Complex Mixtures Using Multiple Enzymes with Complementary Specificity

scientific article

Methionine to isothreonine conversion as a source of false discovery identifications of genetically encoded variants in proteogenomics

scientific article

Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics

scientific article published on 16 April 2018

Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly

scientific article published on 17 October 2018

Proteome-Wide Analysis of ADAR-Mediated Messenger RNA Editing during Fruit Fly Ontogeny

scientific article published on 11 September 2020

Pyteomics 4.0: Five Years of Development of a Python Proteomics Framework

scientific article published on 08 January 2019

Pyteomics--a Python framework for exploratory data analysis and rapid software prototyping in proteomics

scientific article

Scavager: A Versatile Postsearch Validation Algorithm for Shotgun Proteomics Based on Gradient Boosting

scientific article published on 27 December 2018

Unbiased False Discovery Rate Estimation for Shotgun Proteomics Based on the Target-Decoy Approach

scientific article published on 13 December 2016

Validation of Peptide Identification Results in Proteomics Using Amino Acid Counting

article

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