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List of works by Thorben Cordes

'Self-healing' dyes: intramolecular stabilization of organic fluorophores

scientific article published on 27 April 2012

A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET).

scientific article

A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization

scientific article

Accelerated and efficient photochemistry from higher excited electronic states in fulgide molecules

scientific article published in December 2008

Alternating-laser excitation: single-molecule FRET and beyond

scientific article

Caging and Photoactivation in Single-Molecule Förster Resonance Energy Transfer Experiments.

scientific article published on 31 March 2017

Chemical control of Hemithioindigo-photoisomerization – Substituent-effects on different molecular parts

article by Thorben Cordes et al published April 2008 in Chemical Physics Letters

ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data.

scientific article published on 19 June 2019

Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers

scientific article published on 22 March 2019

Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ

article

Conformational dynamics of the ABC transporter McjD seen by single-molecule FRET

scientific article published on 20 September 2018

Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy

scholarly article

Excitation wavelength dependent pump–probe signatures of molecular crystals

Folding and Unfolding of Light-Triggered β-Hairpin Model Peptides

article

Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

scientific article

Innenrücktitelbild: Linker Molecules Convert Commercial Fluorophores into Tailored Functional Probes during Biolabelling (Angew. Chem. 19/2022)

scientific article published in 2022

Inside Back Cover: Linker Molecules Convert Commercial Fluorophores into Tailored Functional Probes during Biolabelling (Angew. Chem. Int. Ed. 19/2022)

scientific article published in 2022

Intramolecular photostabilization via triplet-state quenching: design principles to make organic fluorophores "self-healing".

scientific article published on 9 October 2015

Intrinsically resolution enhancing probes for confocal microscopy

scientific article

Light-Switchable Hemithioindigo–Hemistilbene-Containing Peptides: Ultrafast Spectroscopy of the Z → E Isomerization of the Chromophore and the Structural Dynamics of the Peptide Moiety

article

Light-Switchable Peptides with a Hemithioindigo Unit: Peptide Design, Photochromism, and Optical Spectroscopy

scientific article

Linker Molecules Convert Commercial Fluorophores into Tailored Functional Probes during Biolabelling

scientific article published in 2022

Linking Single-Molecule Blinking to Chromophore Structure and Redox Potentials

article by Ingo H. Stein et al published 8 December 2011 in ChemPhysChem

Make them blink: probes for super-resolution microscopy.

scientific article published on August 2010

Mechanism of intramolecular photostabilization in self-healing cyanine fluorophores.

scientific article

Mechanisms and advancement of antifading agents for fluorescence microscopy and single-molecule spectroscopy

article by Thorben Cordes et al published 2011 in Physical Chemistry Chemical Physics

Micro-structured electrode arrays:

Molecular Driving Forces for Z/E Isomerization Mediated by Heteroatoms: The Example Hemithioindigo

scientific article published on 02 December 2010

Molecular and Spectroscopic Characterization of Green and Red Cyanine Fluorophores from the Alexa Fluor and AF Series*

scientific article published on 29 June 2021

Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold

scientific article published on 01 May 2021

Opportunities and challenges in single-molecule and single-particle fluorescence microscopy for mechanistic studies of chemical reactions

scientific article

PhotochemicalZ→E Isomerization of a Hemithioindigo/Hemistilbene ω-Amino Acid

article

Photochromic bis(thiophen-3-yl)maleimides studied with time-resolved spectroscopy.

scientific article published in February 2009

Plasmonics, Tracking and Manipulating, and Living Cells: general discussion.

scientific article published in December 2015

Quantum optics, molecular spectroscopy and low-temperature spectroscopy: general discussion

Selective Functionalization of Tailored Nanostructures

scientific article published on 27 September 2012

Selective functionalization of patterned glass surfaces

scientific article published on 04 March 2014

Sensing DNA opening in transcription using quenchable Förster resonance energy transfer

scientific article

Single-molecule photophysics of oxazines on DNA and its application in a FRET switch

scientific article published on 12 March 2009

Single-molecule redox blinking of perylene diimide derivatives in water

scientific article published in February 2010

Single-molecule studies of conformational states and dynamics in the ABC importer OpuA

scientific article published on 12 December 2020

Superresolution techniques, biophysics with nanostructures, and fluorescence energy transfer: general discussion

scientific article

Synthesis of novel photochromic pyrans via palladium-mediated reactions

scientific article published on 27 May 2009

The 2015 super-resolution microscopy roadmap

The Power of Two: Covalent Coupling of Photostabilizers for Fluorescence Applications

scientific article published on 17 October 2014

The complex photo-rearrangement of a heterocyclic N-oxide: Kinetics from picoseconds to minutes

The photochemical ring opening reaction of chromene as seen by transient absorption and fluorescence spectroscopy.

scientific article

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection

scientific article published on 28 December 2012

Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer.

scientific article

Ultrafast Hemithioindigo-based peptide-switches

article

Watching conformational dynamics of ABC transporters with single-molecule tools

scientific article

Wavelength and solvent independent photochemistry: the electrocyclic ring-closure of indolylfulgides.

scientific article published on 11 February 2009

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