List of works - Hasan H. Otu

A divide-and-conquer approach to fragment assembly

scientific article published in January 2003

A high-fat, ketogenic diet induces a unique metabolic state in mice

scientific article published on 13 February 2007

A new sequence distance measure for phylogenetic tree construction ⬇️

scientific article published on November 1, 2003

A novel class of vascular endothelial growth factor-responsive genes that require forkhead activity for expression.

scientific article published on 15 September 2006

A novel pathway involving melanoma differentiation associated gene-7/interleukin-24 mediates nonsteroidal anti-inflammatory drug-induced apoptosis and growth arrest of cancer cells.

scientific article published on December 2006

A novel role for GADD45beta as a mediator of MMP-13 gene expression during chondrocyte terminal differentiation

scientific article published on 02 September 2005

Aprotinin attenuates genomic expression variability following cardiac surgery.

scientific article published on 14 September 2009

Bayesian network prior: network analysis of biological data using external knowledge.

scientific article

Bayesian pathway analysis of cancer microarray data

scientific article

Bioinformatic identification and characterization of human endothelial cell-restricted genes

scientific article

Cell reprogramming. Histone chaperone ASF1A is required for maintenance of pluripotency and cellular reprogramming.

scientific article published on 17 July 2014

Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets ⬇️

scientific article published on 18 August 2010

Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes

scientific article published on 08 July 2020

Differences in gene expression profiles of diabetic and nondiabetic patients undergoing cardiopulmonary bypass and cardioplegic arrest

scientific article published in September 2004

Differential expression of GADD45beta in normal and osteoarthritic cartilage: potential role in homeostasis of articular chondrocytes.

scientific article

Differential gene expression analysis reveals generation of an autocrine loop by a mutant epidermal growth factor receptor in glioma cells.

scientific article published on January 2006

Differential transcriptional effects of PTH and estrogen during anabolic bone formation.

scientific article published in October 2004

Essential role of Jun family transcription factors in PU.1 knockdown-induced leukemic stem cells.

scientific article published on 15 October 2006

FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics

scientific article published on 15 August 2019

Gene expression analysis of embryonic stem cells expressing VE-cadherin (CD144) during endothelial differentiation

scientific article

Gene expression of purified beta-cell tissue obtained from human pancreas with laser capture microdissection

scientific article

Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy.

scientific article

Gene expression profiling of granulosa cells from PCOS patients following varying doses of human chorionic gonadotropin.

scientific article published on 5 February 2013

Gene signatures of progression and metastasis in renal cell cancer

scientific article published on 01 August 2005

Genomic counter-stress changes induced by the relaxation response

scientific article

Grammar-based distance in progressive multiple sequence alignment

scientific article

Identification of a novel gene set in human cumulus cells predictive of an oocyte's pregnancy potential

scientific article published on 29 November 2012

Optimization and evaluation of surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) with reversed-phase protein arrays for protein profiling

scientific article

Oxidative stress and atrial fibrillation after cardiac surgery: a case-control study.

scientific article published in October 2007

Pathway analysis of high-throughput biological data within a Bayesian network framework.

scientific article

Prediction of diabetic nephropathy using urine proteomic profiling 10 years prior to development of nephropathy

scientific article

Proteomic analysis of the allograft response.

scientific article published in July 2006

Proteomic identification of interleukin-2 therapy response in metastatic renal cell cancer

scientific article

Reduced PDEF expression increases invasion and expression of mesenchymal genes in prostate cancer cells.

scientific article published on May 2007

Reprogrammed transcriptome in rhesus-bovine interspecies somatic cell nuclear transfer embryos

scientific article

Sequencing, analysis, and annotation of expressed sequence tags for Camelus dromedarius

scientific article

Serum proteomics and biomarkers in hepatocellular carcinoma and chronic liver disease

scientific article

Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. using the relative complexity measure

scientific article

Tob1 is a constitutively expressed repressor of liver regeneration

scientific article

Unique gene expression profile based on pathologic response in epithelial ovarian cancer.

scientific article

Whole genome sequence of a Turkish individual.

scientific article published on 9 January 2014

c-Fos as a proapoptotic agent in TRAIL-induced apoptosis in prostate cancer cells

scientific article

List of works by Hasan H. Otu

A divide-and-conquer approach to fragment assembly

A high-fat, ketogenic diet induces a unique metabolic state in mice

A new sequence distance measure for phylogenetic tree construction ⬇️

A novel class of vascular endothelial growth factor-responsive genes that require forkhead activity for expression.

A novel pathway involving melanoma differentiation associated gene-7/interleukin-24 mediates nonsteroidal anti-inflammatory drug-induced apoptosis and growth arrest of cancer cells.

A novel role for GADD45beta as a mediator of MMP-13 gene expression during chondrocyte terminal differentiation

Aprotinin attenuates genomic expression variability following cardiac surgery.

Bayesian network prior: network analysis of biological data using external knowledge.

Bayesian pathway analysis of cancer microarray data

Bioinformatic identification and characterization of human endothelial cell-restricted genes

Cell reprogramming. Histone chaperone ASF1A is required for maintenance of pluripotency and cellular reprogramming.

Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets ⬇️

Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes

Differences in gene expression profiles of diabetic and nondiabetic patients undergoing cardiopulmonary bypass and cardioplegic arrest

Differential expression of GADD45beta in normal and osteoarthritic cartilage: potential role in homeostasis of articular chondrocytes.

Differential gene expression analysis reveals generation of an autocrine loop by a mutant epidermal growth factor receptor in glioma cells.

Differential transcriptional effects of PTH and estrogen during anabolic bone formation.

Essential role of Jun family transcription factors in PU.1 knockdown-induced leukemic stem cells.

FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics

Gene expression analysis of embryonic stem cells expressing VE-cadherin (CD144) during endothelial differentiation

Gene expression of purified beta-cell tissue obtained from human pancreas with laser capture microdissection

Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy.

Gene expression profiling of granulosa cells from PCOS patients following varying doses of human chorionic gonadotropin.

Gene signatures of progression and metastasis in renal cell cancer

Genomic counter-stress changes induced by the relaxation response

Grammar-based distance in progressive multiple sequence alignment

Identification of a novel gene set in human cumulus cells predictive of an oocyte's pregnancy potential

Optimization and evaluation of surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) with reversed-phase protein arrays for protein profiling

Oxidative stress and atrial fibrillation after cardiac surgery: a case-control study.

Pathway analysis of high-throughput biological data within a Bayesian network framework.

Prediction of diabetic nephropathy using urine proteomic profiling 10 years prior to development of nephropathy

Proteomic analysis of the allograft response.

Proteomic identification of interleukin-2 therapy response in metastatic renal cell cancer

Reduced PDEF expression increases invasion and expression of mesenchymal genes in prostate cancer cells.

Reprogrammed transcriptome in rhesus-bovine interspecies somatic cell nuclear transfer embryos

Sequencing, analysis, and annotation of expressed sequence tags for Camelus dromedarius

Serum proteomics and biomarkers in hepatocellular carcinoma and chronic liver disease

Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. using the relative complexity measure

Tob1 is a constitutively expressed repressor of liver regeneration

Unique gene expression profile based on pathologic response in epithelial ovarian cancer.

Whole genome sequence of a Turkish individual.

c-Fos as a proapoptotic agent in TRAIL-induced apoptosis in prostate cancer cells