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List of works by Barend Mons

A Generic Workflow for the Data FAIRification Process

article published in 2019

A putative role for genome-wide epigenetic regulatory mechanisms in Huntington’s disease: A computational assessment

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

article by Mark D Wilkinson et al published 19 March 2019 in Scientific Data

Ambiguity of human gene symbols in LocusLink and MEDLINE: creating an inventory and a disambiguation test collection.

scientific article published on January 2003

An Online Ontology: WiktionaryZ

An Open, FAIRified Data Commons: Proposal for NIH Data Commons Pilot

scientific article published in July 2017

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic

scientific article published on 25 April 2022

Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE

scientific article (publication date: March 2007)

BIOMEDICINE: Partnership Between South and North Crystallizes Around Malaria

scientific article published in Science

Bioinformatics in the Netherlands: the value of a nationwide community

scientific article published on 01 March 2018

Bioinformatics in the Netherlands: the value of a nationwide community.

scientific article published on 15 September 2017

Bridging the translational innovation gap through good biomarker practice

scientific article published on 28 April 2017

Bromo-deoxyuridine is not incorporated into DNA of malaria parasites

scientific article published in November 1991

Calling on a million minds for community annotation in WikiProteins

scientific article

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud

scientific article (publication date: 7 March 2017)

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes

scientific article published on 18 January 2005

Collaboration and the Semantic Web

Collaborative Computational Technologies for Biomedical Research

Comments to Jean-Claude Burgelman's article Politics and Open Science: How the European Open Science Cloud Became Reality (the Untold Story) —“EOSC is a bigger ME” and the Dunning Kruger effect

scientific article

Common disease signatures from gene expression analysis in Huntington's disease human blood and brain

scientific article published on August 2016

Constructing an associative concept space for literature-based discovery

Contextual annotation of web pages for interactive browsing

scientific article published in January 2004

Converting neXtProt into Linked Data and nanopublications

scientific article

Data Stewardship for Open Science

scientific article published on 9 March 2018

Data stewardship for open science : implementing fair principles

Databases for knowledge discovery. Examples from biomedicine and health care

scientific article published on 29 September 2005

Detection of different developmental stages of malaria parasites by non-radioactive DNA in situ hybridization

scientific article published in March 1991

Distribution of information in biomedical abstracts and full-text publications.

scientific article published on 6 May 2004

Erythrocytic schizogony and invasion of Plasmodium vivax in vitro

article by Barend Mons et al published April 1988 in International Journal for Parasitology

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification

scientific article published on 24 September 2006

Explain your data by Concept Profile Analysis Web Services

article published in 2014

FAIR Principles: Interpretations and Implementation Considerations

scholarly article

FAIR Science for Social Machines: Let's Share Metadata Knowlets in the Internet of FAIR Data and Services

article published in 2019

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites ⬇️

Generation of chromosome size polymorphism during in vivo mitotic multiplication of Plasmodium berghei involves both loss and addition of subtelomeric repeat sequences.

scientific article

Generic information can retrieve known biological associations: implications for biomedical knowledge discovery.

scientific article

Getting ready for the Human Phenome Project: the 2012 forum of the Human Variome Project

scientific article

Host cell specificity and schizogony of Plasmodium berghei under different in vitro conditions

scientific article published in August 1989

Improving data and knowledge management to better integrate health care and research.

scientific article

In silico discovery and experimental validation of new protein-protein interactions

scientific article (publication date: 31 January 2011)

In silico knowledge and content tracking

scientific article published on January 2011

In vitro culture of Plasmodium berghei using a new suspension system

article

Induction of sexual differentiation in malaria

scientific article published in September 1985

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information

scientific article (publication date: 2014)

Integrative knowledge management to enhance pharmaceutical R&D

scientific article

Invest 5% of research funds in ensuring data are reusable

scientific article published on 01 February 2020

Laboratory models for research in vivo and in vitro on malaria parasites of mammals: Current status

scientific article published in January 1990

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease

scientific article

Localization of circumsporozoite protein in the sporogonic stages of Plasmodium vivax.

scientific article published in January 1992

Long-term in vitro cultures of Plasmodium berghei and preliminary observations on gametocytogenesis

article

Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain

scientific article

Mining microarray datasets aided by knowledge stored in literature

scientific article published on January 2003

Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study

scientific article

Novel protein-protein interactions inferred from literature context

scientific article (publication date: 18 November 2009)

Nucleotide sequence variation in the beta-tubulin genes from Plasmodium berghei and Plasmodium falciparum

scientific article

Online tools to support literature-based discovery in the life sciences

scientific article

Open PHACTS: semantic interoperability for drug discovery ⬇️

scientific article (publication date: November 2012)

Plasmodium berghei: gametocyte production, DNA content, and chromosome-size polymorphisms during asexual multiplication in vivo

scientific article published in April 1989

Plasmodium berghei: in vivo generation and selection of karyotype mutants and non-gametocyte producer mutants

scientific article published in February 1992

Plasmodium berghei: the antimalarial action of artemisinin and sodium artelinate in vivo and in vitro, studied by flow cytometry

scientific article published in February 1990

Plasmodium falciparum: studies on mature exoerythrocytic forms in the liver of the chimpanzee, Pan troglodytes

scientific article published in January 1990

Plasmodium species: flow cytometry and microfluorometry assessments of DNA content and synthesis.

scientific article

Plasmodium vivax: in vitro growth and reinvasion in red blood cells of Aotus nancymai

scientific article published in August 1988

Playing catch-up in building an open research commons

scientific article published on 15 July 2022

Presence of contaminating mitochondrial DNA from host reticulocytes in experimental infections of Plasmodium berghei

scientific article published in November 1989

Querying NeXtProt Nanopublications and Their Value for Insights on Sequence Variants and Tissue Expression

scientific article published on 11 July 2018

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

scientific article

Repository of mutations from Oman: The entry point to a national mutation database

scientific article

Research for research: tools for knowledge discovery and visualization.

scientific article

Solving bottlenecks in data sharing in the life sciences

scientific article

Speeding up research with the Semantic Web

scientific article (publication date: 2012)

Supporting nanopublication provenance

Text mining for biology - the way forward: opinions from leading scientists

scientific article (publication date: 2008)

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation

scientific article

The Comparative Anatomy of Nanopublications and FAIR Digital Objects

scientific article published in 2022

The Dutch Techcentre for Life Sciences: Enabling data-intensive life science research in the Netherlands

scientific article

The ELIXIR channel in F1000Research

scientific article

The FAIR Guiding Principles for scientific data management and stewardship

scientific article (publication date: 15 March 2016)

The FAIR Principles: First Generation Implementation Choices and Challenges

The Implicitome: A Resource for Rationalizing Gene-Disease Associations

scientific article

The VODAN IN: support of a FAIR-based infrastructure for COVID-19

scientific article published on 06 May 2020

The case for open science: rare diseases

scientific article published on 12 September 2020

The complete development in vitro of the vertebrate phase of the mammalian malarial parasite Plasmodium berghei

scientific article published on January 1987

The complete sequence of a Plasmodium malariae SSUrRNA gene and its comparison to other plasmodial SSUrRNA genes

scientific article

The use of Foundational Ontologies in Bioinformatics ⬇️

The value of data

scientific article

Theoretical and technological building blocks for an innovation accelerator

article

Thesaurus-based disambiguation of gene symbols

scientific article

Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications ⬇️

article

Towards the Tipping Point for FAIR Implementation

article published in 2019

Using contextual queries.

scientific article published on January 2003

Which gene did you mean?

scientific article

Word sense disambiguation in the biomedical domain: an overview

scientific article

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