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List of works by Jun S Song

A comparative study of rectal dose histograms in prostate brachytherapy: some analytic and numerical results

scientific article

A high-resolution map of nucleosome positioning on a fission yeast centromere

scientific article

A unified computational framework for modeling genome-wide nucleosome landscape

scholarly article by Hu Jin published in September 2018

BCL2A1 is a lineage-specific antiapoptotic melanoma oncogene that confers resistance to BRAF inhibition.

scientific article published on 27 February 2013

Build-up and surface dose measurements on phantoms using micro-MOSFET in 6 and 10 MV x-ray beams and comparisons with Monte Carlo calculations.

scientific article published in April 2007

CCCTC-binding factor confines the distal action of estrogen receptor.

scientific article

CEAS: cis-regulatory element annotation system

scientific article published on 01 July 2006

CHANCE: comprehensive software for quality control and validation of ChIP-seq data

scientific article

CRISPR-SKIP: programmable gene splicing with single base editors

article

Cancer. The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer.

scientific article published on 14 May 2015

Categorical spectral analysis of periodicity in human and viral genomes.

scientific article

Categorical spectral analysis of periodicity in nucleosomal DNA.

scientific article published on 17 February 2016

Chd1 is essential for the high transcriptional output and rapid growth of the mouse epiblast

scientific article

ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data.

scientific article published on 21 May 2018

DNA Methylation and Somatic Mutations Converge on the Cell Cycle and Define Similar Evolutionary Histories in Brain Tumors

scientific article

Disruption of the β1L Isoform of GABP Reverses Glioblastoma Replicative Immortality in a TERT Promoter Mutation-Dependent Manner

scientific article published on 01 September 2018

Dynamic IMRT treatments of sinus region tumors: comparison of Monte Carlo calculations with treatment planning system calculations and ion chamber measurements

scientific article published on 01 October 2006

Emergent community agglomeration from data set geometry

scientific article

Genome-wide analysis of estrogen receptor binding sites

scientific article (publication date: November 2006)

HiTSelect: a comprehensive tool for high-complexity-pooled screen analysis

scientific article

High accuracy label-free classification of single-cell kinetic states from holographic cytometry of human melanoma cells.

scientific article published on 20 September 2017

High-throughput mapping of the chromatin structure of human promoters

scientific article published on 14 January 2007

Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq

scientific article

Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells.

scientific article published on 17 April 2011

Inhibition of mTOR induces a paused pluripotent state

scientific article

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.

scientific article published on 11 April 2013

Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer-associated genetic variant rs4415084.

scientific article published on 19 January 2018

Intratumoral Heterogeneity of the Epigenome.

scientific article published on April 2016

Intronic miR-211 assumes the tumor suppressive function of its host gene in melanoma.

scientific article

KnowEnG: a knowledge engine for genomics.

scientific article published on 23 July 2015

Lineage-specific transcriptional regulation of DICER by MITF in melanocytes.

scientific article published on June 2010

Local genomic features predict the distinct and overlapping binding patterns of the bHLH-Zip family oncoproteins MITF and MYC-MAX

scientific article published on 21 December 2018

Maximum entropy methods for extracting the learned features of deep neural networks.

scientific article published on 30 October 2017

Microarray blob-defect removal improves array analysis

scientific article published in March 2007

Model-based analysis of two-color arrays (MA2C).

scientific article

Monte Carlo calculation of rectal dose when using an intrarectal balloon during prostate radiation therapy

scientific article published on 01 September 2007

Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma

scientific article

Negative regulation of tumor suppressor p53 by microRNA miR-504

scientific article

Nkx3-1 and LEF-1 function as transcriptional inhibitors of estrogen receptor activity

scientific article

Normalization, bias correction, and peak calling for ChIP-seq ⬇️

scientific article published on March 31, 2012

Oncogenic BRAF Regulates Oxidative Metabolism via PGC1α and MITF ⬇️

scientific article published on March 7, 2013

Quantifying the role of steric constraints in nucleosome positioning

scientific article published on 27 November 2013

Quantitative analysis and prediction of G-quadruplex forming sequences in double-stranded DNA

scientific article published on 19 April 2016

Quantum transport senses community structure in networks

scientific article published on 01 August 2018

Recurrent epimutations activate gene body promoters in primary glioblastoma

scientific article

SequencEnG: an interactive knowledge base of sequencing techniques

scientific article published on 01 April 2019

Sequence features accurately predict genome-wide MeCP2 binding in vivo.

scientific article published on 24 March 2016

Somatic cells regulate maternal mRNA translation and developmental competence of mouse oocytes

scientific article

Sox1 marks an activated neural stem/progenitor cell in the hippocampus

scientific article published on 19 September 2012

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

scientific article published on 7 February 2008

Systematic identification of barriers to human iPSC generation

scientific article published on July 2014

Tfe3 and Tfeb Transcriptionally Regulate Peroxisome Proliferator-Activated Receptor γ2 Expression in Adipocytes and Mediate Adiponectin and Glucose Levels in Mice

scientific article published on 8 May 2017

The Cancer Genome Atlas Analysis Predicts MicroRNA for Targeting Cancer Growth and Vascularization in Glioblastoma.

scientific article published on 23 April 2015

The genetics of splicing in neuroblastoma

scientific article

Transcription Factor Tfe3 Directly Regulates Pgc-1alpha in Muscle

scientific article

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution

scientific article published on 01 October 2018

Understanding TERT Promoter Mutations: A Common Path to Immortality.

scientific article published on 3 March 2016

Variability among breast radiation oncologists in delineation of the postsurgical lumpectomy cavity.

scientific article

YAP Induces Human Naive Pluripotency

scientific article

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