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List of works by Francisco Rodriguez-Valera

A hybrid NRPS-PKS gene cluster related to the bleomycin family of antitumor antibiotics in Alteromonas macleodii strains

scientific article

A mitochondrial origin for eukaryotic C2H2 zinc finger regulators?

scientific article published on 01 October 2000

A new class of marine Euryarchaeota group II from the Mediterranean deep chlorophyll maximum

scientific article

A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions

scientific article published in January 2001

Adapting to environmental changes using specialized paralogs

scientific article published on 05 March 2008

Amplified-fragment length polymorphism as a complement to IS6110-based restriction fragment length polymorphism analysis for molecular typing of Mycobacterium tuberculosis

scientific article published on October 2003

Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes

scientific article published in September 2004

Approaches to prokaryotic biodiversity: a population genetics perspective.

scientific article

Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise

scientific article published on 15 January 2018

Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis.

scientific article published in September 2008

Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC.

scientific article

CO dehydrogenase genes found in metagenomic fosmid clones from the deep mediterranean sea.

scientific article published on 2 October 2009

CRISPR analysis suggests that small circular single-stranded DNA smacoviruses infect Archaea instead of humans

scientific article published in Nature Communications

Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern

scientific article published on 01 June 2002

Characterization of microbial diversity in hypersaline environments by melting profiles and reassociation kinetics in combination with terminal restriction fragment length polymorphism (T-RFLP).

scientific article published on 14 August 2003

Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers

scientific article

Comparative analysis of genome fragments of Acidobacteria from deep Mediterranean plankton

scientific article

Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter

scientific article published on 31 July 2008

Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea

scientific article published on 01 June 2006

Complete genome sequence of the copiotrophic marine bacterium Alteromonas macleodii strain ATCC 27126T.

scientific article published on December 2012

Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea

scientific article

Correction for López-Pérez et al., Genome Sequence of "Thalassospira australica" NP3b2T Isolated from St. Kilda Beach, Tasman Sea.

scientific article published on 22 January 2015

Correction to: Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya

scholarly article published in Microbiome

Detection and identification of bacterial DNA in patients with cirrhosis and culture-negative, nonneutrocytic ascites

scientific article published on 01 July 2002

Development of a Multilocus Sequence Typing Scheme for Characterization of Clinical Isolates of

scientific article published in 2007

Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii.

scientific article

Diversity of bacteria and Archaea in sulphate-reducing enrichment cultures inoculated from serial dilution of Zostera noltii rhizosphere samples.

scientific article

Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front

scientific article

Diversity of the cell-wall associated genomic island of the archaeon Haloquadratum walsbyi

scientific article published on 13 August 2015

Draft Genome of Spiribacter salinus M19-40, an Abundant Gammaproteobacterium in Aquatic Hypersaline Environments

scientific article published on January 2013

Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle.

scientific article

Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria.

scientific article

Ecogenomics of the SAR11 clade

scientific article published on 15 December 2019

Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp. nov.

scientific article

Effects of Culture Conditions on Poly(beta-Hydroxybutyric Acid) Production by Haloferax mediterranei

scientific article published on August 1990

Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species

scientific article

Environmental genomics, the big picture?

scientific article published on February 2004

Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments

Evidence for metaviromic islands in marine phages

scientific article published on 3 February 2014

Evolution of rhodopsin ion pumps in haloarchaea.

scientific article

Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen : From Genotype to Ecotype

scientific article published in 2019

Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics

scientific article

Expanding the marine virosphere using metagenomics

scientific article published in 2013

Explaining microbial population genomics through phage predation

scientific article published in November 2009

Extremely halophilic bacteria in crystallizer ponds from solar salterns

scientific article

Fast iodide-SAD phasing for high-throughput membrane protein structure determination

scientific article

Flexible genomic islands as drivers of genome evolution

scientific article published on 14 April 2016

Fluorescence in situ hybridization analysis of the prokaryotic community inhabiting crystallizer ponds

article

Genome Reconstruction from Metagenomic Data Sets Reveals Novel Microbes in the Brackish Waters of the Caspian Sea

scientific article

Genome Sequence of "Thalassospira australica" NP3b2T Isolated from St. Kilda Beach, Tasman Sea.

scientific article

Genomes of Abundant and Widespread Viruses from the Deep Ocean

scientific article

Genomes of planktonic Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics

scientific article published on 10 February 2015

Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph

scientific article

Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya

scientific article published in 2019

Genomic diversity of "deep ecotype" Alteromonas macleodii isolates: evidence for Pan-Mediterranean clonal frames

scientific article

Genomic plasticity in prokaryotes: the case of the square haloarchaeon

scientific article

Haloquadratum

scholarly article

Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain

scientific article

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

scientific article

Homologous recombination is involved in the diversity of replacement flexible genomic islands in aquatic prokaryotes

scientific article published on 22 May 2014

IWoCS: analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships.

scientific article

Intra- and intergenomic variation of ribosomal RNA operons in concurrent Alteromonas macleodii strains

scientific article

Is the pan-genome also a pan-selectome?

scientific article published on 21 September 2012

Isolation and cultivation of Walsby's square archaeon

scientific article published in December 2004

Key roles for freshwater Actinobacteria revealed by deep metagenomic sequencing

scientific article published on 21 November 2014

Marine Group II Archaea, potentially important players in the global ocean carbon cycle

scientific article

Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing

scientific article

Metagenomes of Mediterranean Coastal Lagoons

scientific article (publication date: 3 July 2012)

Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

scientific article

Metagenomic analysis of mesopelagic Antarctic plankton reveals a novel deltaproteobacterial group

scientific article published in February 2006

Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber

scientific article

Metagenomic recovery of phage genomes of uncultured freshwater actinobacteria

scientific article published on 9 August 2016

Metagenomics of ancient fermentation pits used for the production of chinese strong-aroma liquor

scientific article

Metagenomics of the deep Mediterranean, a warm bathypelagic habitat

scientific article

Metagenomics of the mucosal microbiota of European eels

scientific article published on 6 November 2014

Metagenomics of the water column in the pristine upper course of the Amazon river

scientific article published in 2011

Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria

scientific article

Micro-Mar: a database for dynamic representation of marine microbial biodiversity.

scientific article

Minimum Information about an Uncultivated Virus Genome (MIUViG)

scientific article published on 17 December 2018

Molecular characterization of a Spanish isolate of Mycobacterium malmoense

scientific article published in January 2002

Molecular evidence supporting the existence of two major groups in uropathogenic Escherichia coli.

scientific article

Multi-environment ecogenomics analysis of the cosmopolitan phylum Gemmatimonadota

scientific article published in 2023

Networking in microbes: conjugative elements and plasmids in the genus Alteromonas

scientific article

New insights into marine group III Euryarchaeota, from dark to light

scientific article published on 13 January 2017

Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea

scientific article

Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs

scientific article published on 21 June 2017

Novel group of podovirus infecting the marine bacterium Alteromonas macleodii

scientific article

Numerous cultivated and uncultivated viruses encode ribosomal proteins

Numerous cultivated and uncultivated viruses encode ribosomal proteins

scientific article published in Nature Communications

Pangenome Evolution in the Marine Bacterium Alteromonas

scientific article published on 29 April 2016

Pangenome evidence for extensive interdomain horizontal transfer affecting lineage core and shell genes in uncultured planktonic thaumarchaeota and euryarchaeota

scientific article

Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle

scientific article published on 05 October 2021

Polyclonality of concurrent natural populations of Alteromonas macleodii

scientific article

Prevalence and microdiversity of Alteromonas macleodii-like microorganisms in different oceanic regions.

scientific article

Prokaryotic diversity in Zostera noltii-colonized marine sediments

scientific article

Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern.

scientific article

Pseudorhizobium pelagicum gen. nov., sp. nov. isolated from a pelagic Mediterranean zone

scientific article

RNA sequencing provides evidence for functional variability between naturally co-existing Alteromonas macleodii lineages

scientific article published on 26 October 2014

ROBUST: The ROle of BUffering capacities in STabilising coastal lagoon ecosystems

scholarly article

Reconstructing viral genomes from the environment using fosmid clones: the case of haloviruses

scientific article published on 30 March 2012

Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs

scientific article

Reconstruction of novel cyanobacterial siphovirus genomes from Mediterranean metagenomic fosmids

scientific article

Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA operons in representatives of the Escherichia coli ECOR collection

scientific article published on July 1998

Sequence microdiversity at the ribosomal RNA operons of Escherichia coli pyelonephritogenic strains.

scientific article

Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean

scientific article published on 18 September 2018

Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA

scientific article published in 1997

Structural studies on the acidic exopolysaccharide from Haloferax denitrificans ATCC 35960.

scientific article published in June 1999

Tales from a thousand and one phages

scientific article

Thalassospira australica sp. nov. isolated from sea water

scientific article

The Neolithic revolution of bacterial genomes.

scientific article

The bacterial pan-genome:a new paradigm in microbiology.

scientific article published on June 2010

The discovery of CRISPR in archaea and bacteria

scientific article

The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling

scientific article

The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea

scientific article

The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity

scientific article

The structure of the exocellular polysaccharide produced by the Archaeon Haloferax gibbonsii (ATCC 33959).

scientific article published in June 1998

The use of arbitrarily primed PCR (AP-PCR) to develop taxa specific DNA probes of known sequence

scientific article published on December 1994

Thousands of Novel Endolysins Discovered in Uncultured Phage Genomes. ⬇️

scientific article

Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface

scientific article published on 3 July 2017

Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton

scientific article

Unique structure and function of viral rhodopsins

scientific article published on 30 October 2019

Use of the 16S–23S ribosomal genes spacer region in studies of prokaryotic diversity

article

Use of thiobacillus ferrooxidans in a coupled microbiological-electrochemical system for wastewater detoxification

article by Lopez-Lopez A et al published 1 April 1999 in Biotechnology and Bioengineering

Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern.

scientific article published in June 1985

Vertical niche occupation and potential metabolic interplay of microbial consortia in a deeply stratified meromictic model lake

scientific article published in 2023

Viral and microbial community dynamics in four aquatic environments.

scientific article

Viral rhodopsins 1 are an unique family of light-gated cation channels

scientific article published on 11 November 2020

α-cyanobacteria possessing form IA RuBisCO globally dominate aquatic habitats

scientific article published in 2022

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