List of works - Hodaka Fujii

A critical role of the Thy28-MYH9 axis in B cell-specific expression of the Pax5 gene in chicken B cells

scientific article

A distal enhancer at risk locus 11q13.5 promotes suppression of colitis by Treg cells

scientific article published on 13 May 2020

A refined two-step oligoribonucleotide interference-PCR method for precise discrimination of nucleotide differences

scientific article published in Scientific Reports

Allele-specific locus binding and genome editing by CRISPR at the p16INK4a locus

scientific article published on 28 July 2016

An enChIP system for the analysis of bacterial genome functions.

scientific article

Applications of Engineered DNA-Binding Molecules Such as TAL Proteins and the CRISPR/Cas System in Biology Research

scientific article

Apurinic/apyrimidinic endonuclease1/redox factor-1 (Ape1/Ref-1) is essential for IL-21-induced signal transduction through ERK1/2 pathway.

scientific article

Biochemical Analysis of Genome Functions Using Locus-Specific Chromatin Immunoprecipitation Technologies

scientific article

Cytokine-induced nuclear translocation of signaling proteins and their analysis using the inducible translocation trap system.

scientific article published on 18 January 2008

Detection of genome-edited cells by oligoribonucleotide interference-PCR.

scientific article published in August 2018

Direct identification of insulator components by insertional chromatin immunoprecipitation

scientific article (publication date: 2011)

Discovery and characterization of new transcripts from RNA-seq data in mouse CD4(+) T cells

scientific article

Discrimination of CpG Methylation Status and Nucleotide Differences in Tissue Specimen DNA by Oligoribonucleotide Interference-PCR

scientific article published on 20 July 2020

Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR ⬇️

scientific article published on August 11, 2013

Efficient isolation of specific genomic regions retaining molecular interactions by the iChIP system using recombinant exogenous DNA-binding proteins

scientific article (publication date: 27 November 2014)

Efficient sequence-specific isolation of DNA fragments and chromatin by in vitro enChIP technology using recombinant CRISPR ribonucleoproteins

scientific article published on 5 February 2016

Enforced expression of the Ikaros isoform IK5 decreases the numbers of extrathymic intraepithelial lymphocytes and natural killer 1.1+ T cells.

scientific article published in January 2002

Expression of GARP selectively identifies activated human FOXP3+ regulatory T cells

scholarly article

Identification of non-coding RNAs associated with telomeres using a combination of enChIP and RNA sequencing

scientific article

Identification of physical interactions between genomic regions by enChIP-Seq.

scientific article

Identification of proteins associated with an IFNγ-responsive promoter by a retroviral expression system for enChIP using CRISPR

scientific article (publication date: 2014)

Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP).

scientific article

Isolation of Specific Genomic Regions and Identification of Associated Molecules by enChIP.

scientific article published on 20 January 2016

Isolation of Specific Genomic Regions and Identification of Their Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using the CRISPR System and TAL Proteins

scientific article

Isolation of specific genomic regions and identification of associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR.

scientific article published on January 2015

Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line

scientific article

Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immnoprecipitation (iChIP)

Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immunoprecipitation

scientific article published on 10 January 2013

Mechanisms of Signal Transduction from Receptors of Type I and Type II Cytokines.

scientific article published on January 2007

Normal B cell development and Pax5 expression in Thy28/ThyN1-deficient mice

scientific article published on 22 July 2019

Oligoribonucleotide (ORN) interference-PCR (ORNi-PCR): a simple method for suppressing PCR amplification of specific DNA sequences using ORNs.

scientific article

Plasmodium circumsporozoite protein promotes the development of the liver stages of the parasite

scientific article (publication date: 2 November 2007)

Promoter-associated proteins of EPAS1 identified by enChIP-MS - A putative role of HDX as a negative regulator

scientific article published on 22 March 2018

Pyk2 is a downstream mediator of the IL-2 receptor-coupled Jak signaling pathway

scientific journal article

Receptor expression is essential for proliferation induced by dimerized Jak kinases.

scientific article

Redundant promoter elements mediate IL-3-induced expression of a novel cytokine-inducible gene, cyclon

scientific journal article

Regulation of Fas-mediated immune homeostasis by an activation-induced protein, Cyclon.

scientific article published on 15 June 2009

Regulation of Stat1 protein expression by phenylalanine 172 in the coiled-coil domain.

scientific article published on 12 June 2006

Regulation of cell proliferation by interleukin-3-induced nuclear translocation of pyruvate kinase.

scientific article published on 19 April 2007

Regulation of the Expression of GARP/Latent TGF-β1 Complexes on Mouse T Cells and Their Role in Regulatory T Cell and Th17 Differentiation ⬇️

scientific article published on May 3, 2013

Simultaneous Detection of the T790M and L858R Mutations in the EGFR Gene by Oligoribonucleotide Interference-PCR

scientific article published on 17 August 2019

Species-specific 5′-genomic structure and multiple transcription start sites in the chicken Pax5 gene ⬇️

scientific article published on January 15, 2011

Temporal regulation of Stat5 activity in determination of cell differentiation program

scientific article

The role of platelet and endothelial GARP in thrombosis and hemostasis

scientific article

Transcription start sites and usage of the first exon of mouse Foxp3 gene ⬇️

scientific article published on June 22, 2012

Transgenic mouse lines expressing the 3xFLAG-dCas9 protein for enChIP analysis.

scientific article published on 26 February 2018

enChIP systems using different CRISPR orthologues and epitope tags.

scientific article published on 27 February 2018

enChIP-Seq Analyzer: A Software Program to Analyze and Interpret enChIP-Seq Data for the Detection of Physical Interactions between Genomic Regions

scientific article published on 07 March 2022

List of works by Hodaka Fujii

A critical role of the Thy28-MYH9 axis in B cell-specific expression of the Pax5 gene in chicken B cells

A distal enhancer at risk locus 11q13.5 promotes suppression of colitis by Treg cells

A refined two-step oligoribonucleotide interference-PCR method for precise discrimination of nucleotide differences

Allele-specific locus binding and genome editing by CRISPR at the p16INK4a locus

An enChIP system for the analysis of bacterial genome functions.

Applications of Engineered DNA-Binding Molecules Such as TAL Proteins and the CRISPR/Cas System in Biology Research

Apurinic/apyrimidinic endonuclease1/redox factor-1 (Ape1/Ref-1) is essential for IL-21-induced signal transduction through ERK1/2 pathway.

Biochemical Analysis of Genome Functions Using Locus-Specific Chromatin Immunoprecipitation Technologies

Cytokine-induced nuclear translocation of signaling proteins and their analysis using the inducible translocation trap system.

Detection of genome-edited cells by oligoribonucleotide interference-PCR.

Direct identification of insulator components by insertional chromatin immunoprecipitation

Discovery and characterization of new transcripts from RNA-seq data in mouse CD4(+) T cells

Discrimination of CpG Methylation Status and Nucleotide Differences in Tissue Specimen DNA by Oligoribonucleotide Interference-PCR

Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR ⬇️

Efficient isolation of specific genomic regions retaining molecular interactions by the iChIP system using recombinant exogenous DNA-binding proteins

Efficient sequence-specific isolation of DNA fragments and chromatin by in vitro enChIP technology using recombinant CRISPR ribonucleoproteins

Enforced expression of the Ikaros isoform IK5 decreases the numbers of extrathymic intraepithelial lymphocytes and natural killer 1.1+ T cells.

Expression of GARP selectively identifies activated human FOXP3+ regulatory T cells

Identification of non-coding RNAs associated with telomeres using a combination of enChIP and RNA sequencing

Identification of physical interactions between genomic regions by enChIP-Seq.

Identification of proteins associated with an IFNγ-responsive promoter by a retroviral expression system for enChIP using CRISPR

Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP).

Isolation of Specific Genomic Regions and Identification of Associated Molecules by enChIP.

Isolation of Specific Genomic Regions and Identification of Their Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using the CRISPR System and TAL Proteins

Isolation of specific genomic regions and identification of associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR.

Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line

Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immnoprecipitation (iChIP)

Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immunoprecipitation

Mechanisms of Signal Transduction from Receptors of Type I and Type II Cytokines.

Normal B cell development and Pax5 expression in Thy28/ThyN1-deficient mice

Oligoribonucleotide (ORN) interference-PCR (ORNi-PCR): a simple method for suppressing PCR amplification of specific DNA sequences using ORNs.

Plasmodium circumsporozoite protein promotes the development of the liver stages of the parasite

Promoter-associated proteins of EPAS1 identified by enChIP-MS - A putative role of HDX as a negative regulator

Pyk2 is a downstream mediator of the IL-2 receptor-coupled Jak signaling pathway

Receptor expression is essential for proliferation induced by dimerized Jak kinases.

Redundant promoter elements mediate IL-3-induced expression of a novel cytokine-inducible gene, cyclon

Regulation of Fas-mediated immune homeostasis by an activation-induced protein, Cyclon.

Regulation of Stat1 protein expression by phenylalanine 172 in the coiled-coil domain.

Regulation of cell proliferation by interleukin-3-induced nuclear translocation of pyruvate kinase.

Regulation of the Expression of GARP/Latent TGF-β1 Complexes on Mouse T Cells and Their Role in Regulatory T Cell and Th17 Differentiation ⬇️

Simultaneous Detection of the T790M and L858R Mutations in the EGFR Gene by Oligoribonucleotide Interference-PCR

Species-specific 5′-genomic structure and multiple transcription start sites in the chicken Pax5 gene ⬇️

Temporal regulation of Stat5 activity in determination of cell differentiation program

The role of platelet and endothelial GARP in thrombosis and hemostasis

Transcription start sites and usage of the first exon of mouse Foxp3 gene ⬇️

Transgenic mouse lines expressing the 3xFLAG-dCas9 protein for enChIP analysis.

enChIP systems using different CRISPR orthologues and epitope tags.

enChIP-Seq Analyzer: A Software Program to Analyze and Interpret enChIP-Seq Data for the Detection of Physical Interactions between Genomic Regions