Search filters

List of works by Hervé Ménager

A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it.

scientific article published on 22 July 2018

ARIAweb: a server for automated NMR structure calculation

scientific article published on 08 May 2020

An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems

BioShaDock: a community driven bioinformatics shared Docker-based tools registry

scientific article

Bioimage analysis workflows: community resources to navigate through a complex ecosystem

scientific article

Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet

article

Community curation of bioinformatics software and data resources

scientific article published on 16 October 2019

ELIXIR and Toxicology: a community in development

scientific article published on 3 October 2023

Gene expression analysis in EBV-infected ataxia-telangiectasia cell lines by RNA-sequencing reveals protein synthesis defect and immune abnormalities

scientific article published on 28 June 2021

JASS: command line and web interface for the joint analysis of GWAS results

scientific article published on 24 January 2020

MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

scientific article

Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool

scientific article published in 2023

Methods included: Standardizing computational reuse and portability with the Common Workflow Language

scientific article published in June 2022

Mobyle: a new full web bioinformatics framework

scientific article published on 17 August 2009

Multitrait GWAS to connect disease variants and biological mechanisms

scientific article published on 30 August 2021

Nine best practices for research software registries and repositories

scientific article published on 8 August 2022

On-target activity predictions enable improved CRISPR-dCas9 screens in bacteria

scientific article published on 30 April 2020

Perspectives on automated composition of workflows in the life sciences

scientific article

RO-Crate Metadata Specification 1.1.1

academic document

ReGaTE: Registration of Galaxy Tools in Elixir.

scientific article published on 10 April 2017

Recommendations for the packaging and containerizing of bioinformatics software

Recommendations for the packaging and containerizing of bioinformatics software

scientific article published on 14 June 2018

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

article published in 2017

Semantic Map for Structural Bioinformatics: Enhanced Service Discovery Based on High Level Concept Ontology

Synergising ELIXIR resources for training in systems biology

The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis

scientific article published on 22 April 2020

The bio.tools registry of software tools and data resources for the life sciences

article

The iPPI-DB initiative: A Community-centered database of Protein-Protein Interaction modulators

scientific article published on 08 January 2021

Tools and data services registry: a community effort to document bioinformatics resources

scientific article

Using bio.tools to generate and annotate workbench tool descriptions.

scientific article published on 30 November 2017

Using registries to integrate bioinformatics tools and services into workbench environments

biotoolsSchema: a formalized schema for bioinformatics software description

scientific article published in January 2021

Paulina is supported by:

About Paulina

Help