List of works - Takehiro Kusakabe

24. Ca2+ imaging of ascidian larvae with a Ca2+ indicator protein, Cameleon

scientific article published in 2007

A cis-regulatory element essential for photoreceptor cell-specific expression of a medaka retinal guanylyl cyclase gene.

scientific article published on March 2001

A conserved non-reproductive GnRH system in chordates

scientific article

COQ6 mutations in human patients produce nephrotic syndrome with sensorineural deafness

scientific article

Cell lineage and cis-regulation for a unique GABAergic/glycinergic neuron type in the larval nerve cord of the ascidian Ciona intestinalis

scientific article published on February 2012

Cell type and function of neurons in the ascidian nervous system

scientific article published on April 2009

Central nervous system-specific expression of G protein alpha subunits in the ascidian Ciona intestinalis

scientific article published in October 2002

Characterization of the compact bicistronic microRNA precursor, miR-1/miR-133, expressed specifically in Ciona muscle tissues

scientific article published on 16 November 2012

Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis.

scientific article published in April 2002

Cis-acting transcriptional repression establishes a sharp boundary in chordate embryos

scientific article

Comparative genomics identifies a cis-regulatory module that activates transcription in specific subsets of neurons in Ciona intestinalis larvae

scientific article

Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona

scientific article published on December 2004

Constrained vertebrate evolution by pleiotropic genes

article

Corrigendum to “Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona” [Dev. Biol. 276 (2004) 563–580]

article

Cross-validated methods for promoter/transcription start site mapping in SL trans-spliced genes, established using the Ciona intestinalis troponin I gene

scientific article

Decoding cis-regulatory systems in ascidians

scientific article

Differential gene expression and intracellular mRNA localization of amphioxus actin isoforms throughout development: Implications for conserved mechanisms of chordate development

scientific article

Distinctive expression patterns of Hedgehog pathway genes in the Ciona intestinalis larva: implications for a role of Hedgehog signaling in postembryonic development and chordate evolution

scientific article published in February 2010

Ependymal cells of chordate larvae are stem-like cells that form the adult nervous system

scientific article published on 2 January 2011

Erratum to: Ci-opsin1 , a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis 1 (FEBS 25275)

article

Evidence for differential regulation of GnRH signaling via heterodimerization among GnRH receptor paralogs in the protochordate, Ciona intestinalis

scientific article published on 31 January 2012

Evolution and the origin of the visual retinoid cycle in vertebrates

scientific article published on October 2009

Evolution of Anural Development in Ascidians: Role of Muscle-specific Differentiation Genes

Evolution of constrained gonadotropin-releasing hormone ligand conformation and receptor selectivity

scientific article published on 12 September 2005

Evolutionary steps involving counterion displacement in a tunicate opsin

scientific article published on 22 May 2017

Expression of larval-type muscle actin-encoding genes in the ascidian Halocynthia roretzi.

scientific article published in February 1995

Functional diversity of signaling pathways through G protein-coupled receptor heterodimerization with a species-specific orphan receptor subtype

scientific article

Functions of a GnRH receptor heterodimer of the ascidian,Ciona intestinalis

article published in 2008

Gene Expression Profiles in Tadpole Larvae of Ciona intestinalis

article

Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis

scientific article

Glutamatergic networks in the Ciona intestinalis larva

scientific article published in May 2008

Identification of neuron-specific promoters in Ciona intestinalis

scientific article published in June 2004

Individuals with mutations in XPNPEP3, which encodes a mitochondrial protein, develop a nephronophthisis-like nephropathy

scientific article

Introduction and Expression of Recombinant Genes in Ascidian Embryos

article

Localization of mRNAs encoding alpha and beta subunits of soluble guanylyl cyclase in the brain of rainbow trout: comparison with the distribution of neuronal nitric oxide synthase

scientific article

Molecular cloning of cDNAs and expression of mRNAs encoding alpha and beta subunits of soluble guanylyl cyclase from medaka fish Oryzias latipes

scientific article

Monoaminergic modulation of photoreception in ascidian: evidence for a proto-hypothalamo-retinal territory

scientific article

Nephrocystin-5, a ciliary IQ domain protein, is mutated in Senior-Loken syndrome and interacts with RPGR and calmodulin

scientific article

Nonreproductive role of gonadotropin-releasing hormone in the control of ascidian metamorphosis

scientific article published on 22 August 2014

Origin of the vertebrate visual cycle

scientific article published on March 2007

Origin of the vertebrate visual cycle: II. Visual cycle proteins are localized in whole brain including photoreceptor cells of a primitive chordate

scientific article published in December 2003

Origin of the vertebrate visual cycle: III. Distinct distribution of RPE65 and beta-carotene 15,15'-monooxygenase homologues in Ciona intestinalis

scientific article

Origin of the vertebrate visual cycle: genes encoding retinal photoisomerase and two putative visual cycle proteins are expressed in whole brain of a primitive chordate

scientific article published in May 2003

Photoreceptive systems in ascidians

scientific article published on March 2007

Photoreceptors and olfactory cells express the same retinal guanylyl cyclase isoform in medaka: visualization by promoter transgenics.

scientific article published in October 2000

Pigmented and nonpigmented ocelli in the brain vesicle of the ascidian larva

scientific article

Predominant expression of a cytoskeletal actin gene in mesenchyme cells during embryogenesis of the ascidian Halocynthia roretzi

article

Regulation and Evolution of Genes in Ascidians

article

Revised lineage of larval photoreceptor cells in Ciona reveals archetypal collaboration between neural tube and neural crest in sensory organ formation

scientific article published on 24 October 2016

Short upstream sequences associated with the muscle-specific expression of an actin gene in ascidian embryos.

scientific article published in December 1994

Simple motor system of the ascidian larva: neuronal complex comprising putative cholinergic and GABAergic/glycinergic neurons

scientific article published in February 2010

Structure, expression, and cluster organization of genes encoding gonadotropin-releasing hormone receptors found in the neural complex of the ascidian Ciona intestinalis

scientific article published in December 2003

Targeted knockdown of an opsin gene inhibits the swimming behaviour photoresponse of ascidian larvae

article

Temporal and Spatial Expression of a Muscle Actin Gene during Embryogenesis of the Ascidian Halocynthia roretzi. (Specific gene expression/a muscle actin gene/muscle lineage cells/ascidian embryos)

article

The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.

scientific article published on 20 July 2010

The centrosomal protein nephrocystin-6 is mutated in Joubert syndrome and activates transcription factor ATF4

scientific article

The pre-vertebrate origins of neurogenic placodes.

scientific article published on 10 August 2015

Timing of initiation of muscle-specific gene expression in the ascidian embryo precedes that of developmental fate restriction in lineage cells

article

Transcriptional co-regulation of evolutionarily conserved microRNA/cone opsin gene pairs: implications for photoreceptor subtype specification

scientific article published on 2 May 2014

Tube formation by complex cellular processes in Ciona intestinalis notochord

scientific article

Tunic Cuticular Protrusions in Ascidians (Chordata, Tunicata): A Perspective of Their Character-State Distribution

scientific article published in 1997

Tunicate muscle actin genes. Structure and organization as a gene cluster

scientific article published on October 5, 1992

List of works by Takehiro Kusakabe

24. Ca2+ imaging of ascidian larvae with a Ca2+ indicator protein, Cameleon

A cis-regulatory element essential for photoreceptor cell-specific expression of a medaka retinal guanylyl cyclase gene.

A conserved non-reproductive GnRH system in chordates

COQ6 mutations in human patients produce nephrotic syndrome with sensorineural deafness

Cell lineage and cis-regulation for a unique GABAergic/glycinergic neuron type in the larval nerve cord of the ascidian Ciona intestinalis

Cell type and function of neurons in the ascidian nervous system

Central nervous system-specific expression of G protein alpha subunits in the ascidian Ciona intestinalis

Characterization of the compact bicistronic microRNA precursor, miR-1/miR-133, expressed specifically in Ciona muscle tissues

Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis.

Cis-acting transcriptional repression establishes a sharp boundary in chordate embryos

Comparative genomics identifies a cis-regulatory module that activates transcription in specific subsets of neurons in Ciona intestinalis larvae

Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona

Constrained vertebrate evolution by pleiotropic genes

Corrigendum to “Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona” [Dev. Biol. 276 (2004) 563–580]

Cross-validated methods for promoter/transcription start site mapping in SL trans-spliced genes, established using the Ciona intestinalis troponin I gene

Decoding cis-regulatory systems in ascidians

Differential gene expression and intracellular mRNA localization of amphioxus actin isoforms throughout development: Implications for conserved mechanisms of chordate development

Distinctive expression patterns of Hedgehog pathway genes in the Ciona intestinalis larva: implications for a role of Hedgehog signaling in postembryonic development and chordate evolution

Ependymal cells of chordate larvae are stem-like cells that form the adult nervous system

Erratum to: Ci-opsin1 , a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis 1 (FEBS 25275)

Evidence for differential regulation of GnRH signaling via heterodimerization among GnRH receptor paralogs in the protochordate, Ciona intestinalis

Evolution and the origin of the visual retinoid cycle in vertebrates

Evolution of Anural Development in Ascidians: Role of Muscle-specific Differentiation Genes

Evolution of constrained gonadotropin-releasing hormone ligand conformation and receptor selectivity

Evolutionary steps involving counterion displacement in a tunicate opsin

Expression of larval-type muscle actin-encoding genes in the ascidian Halocynthia roretzi.

Functional diversity of signaling pathways through G protein-coupled receptor heterodimerization with a species-specific orphan receptor subtype

Functions of a GnRH receptor heterodimer of the ascidian,Ciona intestinalis

Gene Expression Profiles in Tadpole Larvae of Ciona intestinalis

Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis

Glutamatergic networks in the Ciona intestinalis larva

Identification of neuron-specific promoters in Ciona intestinalis

Individuals with mutations in XPNPEP3, which encodes a mitochondrial protein, develop a nephronophthisis-like nephropathy

Introduction and Expression of Recombinant Genes in Ascidian Embryos

Localization of mRNAs encoding alpha and beta subunits of soluble guanylyl cyclase in the brain of rainbow trout: comparison with the distribution of neuronal nitric oxide synthase

Molecular cloning of cDNAs and expression of mRNAs encoding alpha and beta subunits of soluble guanylyl cyclase from medaka fish Oryzias latipes

Monoaminergic modulation of photoreception in ascidian: evidence for a proto-hypothalamo-retinal territory

Nephrocystin-5, a ciliary IQ domain protein, is mutated in Senior-Loken syndrome and interacts with RPGR and calmodulin

Nonreproductive role of gonadotropin-releasing hormone in the control of ascidian metamorphosis

Origin of the vertebrate visual cycle

Origin of the vertebrate visual cycle: II. Visual cycle proteins are localized in whole brain including photoreceptor cells of a primitive chordate

Origin of the vertebrate visual cycle: III. Distinct distribution of RPE65 and beta-carotene 15,15'-monooxygenase homologues in Ciona intestinalis

Origin of the vertebrate visual cycle: genes encoding retinal photoisomerase and two putative visual cycle proteins are expressed in whole brain of a primitive chordate

Photoreceptive systems in ascidians

Photoreceptors and olfactory cells express the same retinal guanylyl cyclase isoform in medaka: visualization by promoter transgenics.

Pigmented and nonpigmented ocelli in the brain vesicle of the ascidian larva

Predominant expression of a cytoskeletal actin gene in mesenchyme cells during embryogenesis of the ascidian Halocynthia roretzi

Regulation and Evolution of Genes in Ascidians

Revised lineage of larval photoreceptor cells in Ciona reveals archetypal collaboration between neural tube and neural crest in sensory organ formation

Short upstream sequences associated with the muscle-specific expression of an actin gene in ascidian embryos.

Simple motor system of the ascidian larva: neuronal complex comprising putative cholinergic and GABAergic/glycinergic neurons

Structure, expression, and cluster organization of genes encoding gonadotropin-releasing hormone receptors found in the neural complex of the ascidian Ciona intestinalis

Targeted knockdown of an opsin gene inhibits the swimming behaviour photoresponse of ascidian larvae

Temporal and Spatial Expression of a Muscle Actin Gene during Embryogenesis of the Ascidian Halocynthia roretzi. (Specific gene expression/a muscle actin gene/muscle lineage cells/ascidian embryos)

The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.

The centrosomal protein nephrocystin-6 is mutated in Joubert syndrome and activates transcription factor ATF4

The pre-vertebrate origins of neurogenic placodes.

Timing of initiation of muscle-specific gene expression in the ascidian embryo precedes that of developmental fate restriction in lineage cells

Transcriptional co-regulation of evolutionarily conserved microRNA/cone opsin gene pairs: implications for photoreceptor subtype specification

Tube formation by complex cellular processes in Ciona intestinalis notochord

Tunic Cuticular Protrusions in Ascidians (Chordata, Tunicata): A Perspective of Their Character-State Distribution

Tunicate muscle actin genes. Structure and organization as a gene cluster