List of works - Rodrigo López

A new bioinformatics analysis tools framework at EMBL-EBI.

scientific article

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

scientific article

A type-III DNA restriction and modification system in Bacillus cereus?

scientific article

Analysis Tool Web Services from the EMBL-EBI ⬇️

scientific article published on May 13, 2013

Assembly information services in the European Nucleotide Archive

scientific article

BioCatalogue: A Curated Web Service Registry For The Life Science Community

BioCatalogue: a universal catalogue of web services for the life sciences

scientific article (publication date: July 2010)

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

scientific article

Bioinformatics training: selecting an appropriate learning content management system--an example from the European Bioinformatics Institute.

scientific article

Bioinformatics: Using the Molecular Biology Data

scholarly article

Content discovery and retrieval services at the European Nucleotide Archive

scientific article

CpG islands as gene markers in the human genome

scientific article published in August 1992

Data curation + process curation=data integration + science

scientific article

Discovering and linking public omics data sets using the Omics Discovery Index.

scientific article

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

scientific article

EMBL Nucleotide Sequence Database in 2006.

scientific article published on 05 December 2006

EMBL Nucleotide Sequence Database: developments in 2005

scientific article

Evaluation of the exon predictions of the GRAIL software

scientific article published on 01 November 1994

Facing growth in the European Nucleotide Archive

scientific article

Fast and efficient searching of biological data resources--using EB-eye

scientific article

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

scientific article (publication date: 11 October 2011)

HMMER web server: 2018 update.

scientific article published in July 2018

IPD--the Immuno Polymorphism Database

scientific article

IPD--the Immuno Polymorphism Database.

scientific article

Identifying ELIXIR Core Data Resources

scientific article

Improvements to services at the European Nucleotide Archive

scientific article

Initial analysis of complete genome sequences of SARS coronavirus

scientific article published in June 2003

InterPro in 2011: new developments in the family and domain prediction database

scientific article

InterPro in 2011: new developments in the family and domain prediction database

scientific article published on 19 May 2012

InterPro in 2017-beyond protein family and domain annotations

scientific article

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

article by Alex Mitchell et al published 6 November 2018 in Nucleic Acids Research

InterPro, progress and status in 2005

scientific article

InterPro--an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: December 2000)

InterPro: an integrated documentation resource for protein families, domains and functional sites

scientific article

InterPro: the integrative protein signature database

scientific article

InterProScan 5: genome-scale protein function classification

scientific article

Multiple sequence alignment with the Clustal series of programs

scientific article

New developments in the InterPro database

scientific article published in January 2007

Non-redundant patent sequence databases with value-added annotations at two levels

scientific article (publication date: 2010)

Omics Discovery Index - Discovering and Linking Public Omics Datasets

PSI-Search: iterative HOE-reduced profile SSEARCH searching

scientific article

Petabyte-scale innovations at the European Nucleotide Archive

scientific article

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database

scientific article (publication date: 2008)

Programmatic access to bioinformatics tools from EMBL-EBI update: 2017

scientific article published on 20 April 2017

Public services from the European Bioinformatics Institute

scientific article published in December 2003

Public web-based services from the European Bioinformatics Institute

scientific article published on July 2004

Query-seeded iterative sequence similarity searching improves selectivity 5-20-fold

scientific article

Reorganizing the protein space at the Universal Protein Resource (UniProt)

scientific article (publication date: 2012)

SOAP-based services provided by the European Bioinformatics Institute

scientific article

SPINE bioinformatics and data-management aspects of high-throughput structural biology

scientific article

The EBI SRS server--recent developments

scientific article published on February 2002

The EBI SRS server-new features

scientific article

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI

scientific article

The EBI enzyme portal

scientific article

The EBI search engine: EBI search as a service-making biological data accessible for all

scientific article

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences

scientific article published on 17 January 2020

The EMBL Nucleotide Sequence Database

scientific article

The EMBL Nucleotide Sequence Database

scientific article (published 2005-01-01)

The EMBL Nucleotide Sequence Database

scientific article published in January 1999

The EMBL Nucleotide Sequence Database.

scientific article published in January 2004

The EMBL Nucleotide Sequence Database: major new developments

scientific article

The EMBL nucleotide sequence database.

scientific article

The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024

scientific article published in 2024

The EMBL-EBI bioinformatics web and programmatic tools framework.

scientific article

The EMBL-EBI search and sequence analysis tools APIs in 2019

scientific article published on 01 July 2019

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics

scientific article (publication date: 20 March 2013)

The European Bioinformatics Institute in 2018: tools, infrastructure and training

scientific article published on 01 January 2019

The European Bioinformatics Institute web site: a new view

scientific article published on March 2003

The European Bioinformatics Institute's data resources.

scientific article

The European Nucleotide Archive in 2021

scientific article published on 01 January 2022

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

scientific article (publication date: 2004)

The IMGT/HLA database

scientific article

The IMGT/HLA database

The InterPro database, 2003 brings increased coverage and new features

scientific article (publication date: 2003)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: 2001)

The InterPro protein families database: the classification resource after 15 years

scientific article

The Universal Protein Resource (UniProt)

scientific article

The Universal Protein Resource (UniProt): an expanding universe of protein information

scientific article

The annotation-enriched non-redundant patent sequence databases

scientific article published on 9 February 2013

The bio.tools registry of software tools and data resources for the life sciences

article

UniProt archive

scientific article

UniProt: the Universal Protein knowledgebase

scientific article from 2004

Using EMBL-EBI Services via Web Interface and Programmatically via Web Services

scientific article

Using EMBL-EBI Services via Web Interface and Programmatically via Web Services

scientific article published on 30 April 2019

WU-Blast2 server at the European Bioinformatics Institute

scientific article

Web services at the European Bioinformatics Institute-2009

scientific article

Web services at the European bioinformatics institute

scientific article (publication date: July 2007)

List of works by Rodrigo López

A new bioinformatics analysis tools framework at EMBL-EBI.

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

A type-III DNA restriction and modification system in Bacillus cereus?

Analysis Tool Web Services from the EMBL-EBI ⬇️

Assembly information services in the European Nucleotide Archive

BioCatalogue: A Curated Web Service Registry For The Life Science Community

BioCatalogue: a universal catalogue of web services for the life sciences

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

Bioinformatics training: selecting an appropriate learning content management system--an example from the European Bioinformatics Institute.

Bioinformatics: Using the Molecular Biology Data

Content discovery and retrieval services at the European Nucleotide Archive

CpG islands as gene markers in the human genome

Data curation + process curation=data integration + science

Discovering and linking public omics data sets using the Omics Discovery Index.

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

EMBL Nucleotide Sequence Database in 2006.

EMBL Nucleotide Sequence Database: developments in 2005

Evaluation of the exon predictions of the GRAIL software

Facing growth in the European Nucleotide Archive

Fast and efficient searching of biological data resources--using EB-eye

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

HMMER web server: 2018 update.

IPD--the Immuno Polymorphism Database

IPD--the Immuno Polymorphism Database.

Identifying ELIXIR Core Data Resources

Improvements to services at the European Nucleotide Archive

Initial analysis of complete genome sequences of SARS coronavirus

InterPro in 2011: new developments in the family and domain prediction database

InterPro in 2011: new developments in the family and domain prediction database

InterPro in 2017-beyond protein family and domain annotations

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

InterPro, progress and status in 2005

InterPro--an integrated documentation resource for protein families, domains and functional sites

InterPro: an integrated documentation resource for protein families, domains and functional sites

InterPro: the integrative protein signature database

InterProScan 5: genome-scale protein function classification

Multiple sequence alignment with the Clustal series of programs

New developments in the InterPro database

Non-redundant patent sequence databases with value-added annotations at two levels

Omics Discovery Index - Discovering and Linking Public Omics Datasets

PSI-Search: iterative HOE-reduced profile SSEARCH searching

Petabyte-scale innovations at the European Nucleotide Archive

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database

Programmatic access to bioinformatics tools from EMBL-EBI update: 2017

Public services from the European Bioinformatics Institute

Public web-based services from the European Bioinformatics Institute

Query-seeded iterative sequence similarity searching improves selectivity 5-20-fold

Reorganizing the protein space at the Universal Protein Resource (UniProt)

SOAP-based services provided by the European Bioinformatics Institute

SPINE bioinformatics and data-management aspects of high-throughput structural biology

The EBI SRS server--recent developments

The EBI SRS server-new features

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI

The EBI enzyme portal

The EBI search engine: EBI search as a service-making biological data accessible for all

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences

The EMBL Nucleotide Sequence Database

The EMBL Nucleotide Sequence Database

The EMBL Nucleotide Sequence Database

The EMBL Nucleotide Sequence Database.

The EMBL Nucleotide Sequence Database: major new developments

The EMBL nucleotide sequence database.

The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024

The EMBL-EBI bioinformatics web and programmatic tools framework.

The EMBL-EBI search and sequence analysis tools APIs in 2019

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics

The European Bioinformatics Institute in 2018: tools, infrastructure and training

The European Bioinformatics Institute web site: a new view

The European Bioinformatics Institute's data resources.

The European Nucleotide Archive in 2021

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

The IMGT/HLA database

The IMGT/HLA database

The IMGT/HLA database

The InterPro database, 2003 brings increased coverage and new features

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

The InterPro protein families database: the classification resource after 15 years

The Universal Protein Resource (UniProt)

The Universal Protein Resource (UniProt): an expanding universe of protein information