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List of works by Alan Berry

7.3 Directed Evolution and (Semi-) Rational Design Strategies for the Creation of Synthetically useful, Stereoselective Biocatalysts

A Reactive, Surface Cysteine Residue of the Class-II Fructose-1,6-Bisphosphate Aldolase of Escherichia coli Revealed by Electrospray Ionisation Mass Spectrometry

scientific article published on 01 January 1995

A designed mutant of the enzyme glutathione reductase shortens the crystallization time by a factor of forty.

scientific article

A functional role for a flexible loop containing Glu182 in the class II fructose-1,6-bisphosphate aldolase from Escherichia coli.

scientific article published in January 2002

A thermostable variant of fructose bisphosphate aldolase constructed by directed evolution also shows increased stability in organic solvents

scientific article published in September 2004

Advances in Pathway Engineering for Natural Product Biosynthesis

scholarly article by Sarah M. Pearsall et al published 14 September 2015 in ChemCatChem

Aldolase-catalysed stereoselective synthesis of fluorinated small molecules

scientific article

Alternative proton donors/acceptors in the catalytic mechanism of the glutathione reductase of Escherichia coli: the role of histidine-439 and tyrosine-99.

scientific article

An Enantio- and Diastereoselective Chemoenzymatic Synthesis of α-Fluoro β-Hydroxy Carboxylic Esters

scientific article published on 19 April 2016

An Enantio- and Diastereoselective Chemoenzymatic Synthesis of α-Fluoro β-Hydroxy Carboxylic Esters

Biosynthesis of zeaxanthin via mevalonate in Paracoccus species strain PTA-3335. A product-based retrobiosynthetic study

scientific article published in February 2002

Cloning, over-expression, purification, and characterisation of N-acetylneuraminate synthase from Streptococcus agalactiae

scientific article published in February 2003

Conserved residues in the mechanism of the E. coli Class II FBP-aldolase

scientific article published in January 1999

Cover Picture: Engineering of a Cytidine 5′-Monophosphate-Sialic Acid Synthetase for Improved Tolerance to Functional Sialic Acids (Adv. Synth. Catal. 18/2013)

scholarly article by Dong Yi et al published 26 November 2013 in Advanced Synthesis & Catalysis

Creation of a pair of stereochemically complementary biocatalysts

scientific article published in December 2006

Creation of a tailored aldolase for the parallel synthesis of sialic acid mimetics

scientific article published in March 2005

Development of an organo- and enzyme-catalysed one-pot, sequential three-component reaction

article

Directed evolution of aldolases for exploitation in synthetic organic chemistry

scientific article published on 19 January 2008

Directed evolution of enzymes for biocatalysis and the life sciences.

scientific article

Engineering aldolases as biocatalysts

scientific article published on 04 January 2014

Engineering of a Cytidine 5′-Monophosphate-Sialic Acid Synthetase for Improved Tolerance to Functional Sialic Acids

article

Engineering of an intersubunit disulphide bridge in glutathione reductase from Escherichia coli

scientific article published on 01 December 1988

Evaluation of fluoropyruvate as nucleophile in reactions catalysed by N-acetyl neuraminic acid lyase variants: scope, limitations and stereoselectivity

scientific article published on 5 November 2015

Exploring substrate binding and discrimination in fructose1, 6-bisphosphate and tagatose 1,6-bisphosphate aldolases

scientific article (publication date: March 2000)

Extending enzyme molecular recognition with an expanded amino acid alphabet

scientific article

Genetics of isoprenoid biosynthesis in Paracoccus zeaxanthinifaciens

scientific article published in September 2002

Hadamard NMR spectroscopy for relaxation measurements of large (>35 kDa) proteins

scientific article published on 20 September 2007

Harmful algal bloom forecast system for SW Ireland. Part I: Description and validation of an operational forecasting model

scientific article published on March 2016

Harmful algal bloom forecast system for SW Ireland. Part II: Are operational oceanographic models useful in a HAB warning system

scientific article

Identification and characterization of important residues in the catalytic mechanism of CMP-Neu5Ac synthetase from Neisseria meningitidis

scientific article

Identification of zinc-binding ligands in the class II fructose-1,6-bisphosphate aldolase of Escherichia coli

scientific article published on 22 February 1993

Initiating a crystallographic study of a class II fructose-1,6-bisphosphate aldolase

scientific article published on 01 June 1992

Investigation of malic acid production in Aspergillus oryzae under nitrogen starvation conditions

scientific article

Metabolic engineering of Escherichia coli for industrial production of glucosamine and N-acetylglucosamine

scientific article published in May 2005

Modifying the stereochemistry of an enzyme-catalyzed reaction by directed evolution

scholarly article

Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium

scientific article

Preuroporphyrinogen, a universal intermediate in the biosynthesis of uroporphyrinogen III

scientific article published on 01 March 1980

Reaction Mechanism of N -Acetylneuraminic Acid Lyase Revealed by a Combination of Crystallography, QM/MM Simulation, and Mutagenesis

scientific article

Structural Insights into Substrate Specificity in Variants of N-Acetylneuraminic Acid Lyase Produced by Directed Evolution

scientific article

Structural Insights into the Recovery of Aldolase Activity inN-Acetylneuraminic Acid Lyase by Replacement of the Catalytically Active Lysine with γ-Thialysine by Using a Chemical Mutagenesis Strategy

scientific article

Structure of anEscherichia coli N-acetyl-D-neuraminic acid lyase mutant, E192N, in complex with pyruvate at 1.45 Å resolution

scientific article

Structure of tagatose-1,6-bisphosphate aldolase. Insight into chiral discrimination, mechanism, and specificity of class II aldolases

scientific article

Structure-guided saturation mutagenesis of N-acetylneuraminic acid lyase for the synthesis of sialic acid mimetics.

scientific article published on 16 May 2005

Synthesis of screening substrates for the directed evolution of sialic acid aldolase: towards tailored enzymes for the preparation of influenza A sialidase inhibitor analogues

scientific article published on 12 April 2005

The crystal structure of Escherichia coli class II fructose-1, 6-bisphosphate aldolase in complex with phosphoglycolohydroxamate reveals details of mechanism and specificity

scientific article

The isolation and characterization of catalytically competent porphobilinogen deaminase-intermediate complexes

scientific article published on 01 July 1981

The moonlighting protein fructose-1, 6-bisphosphate aldolase of Neisseria meningitidis: surface localization and role in host cell adhesion

scientific journal article

The oil spill model OILTRANS and its application to the Celtic Sea

scientific article published on August 15, 2012

The organization of divalent cations in the active site of cadmium Escherichia coli fructose-1,6-bisphosphate aldolase

scientific article (publication date: March 2003)

The pathway of L-ascorbic acid biosynthesis in the colourless microalga Prototheca moriformis

scientific article published in August 2003

Towards designer organelles by subverting the peroxisomal import pathway

scientific article published on 6 September 2017

Use of numerical models for determination of best sampling locations for monitoring of large lakes

scientific article published on 5 May 2009