List of works - James Lyons-Weiler

A New Microarray, Enriched in Pancreas and Pancreatic Cancer cDNAs to Identify Genes Relevant to Pancreatic Cancer

scientific article published on 01 September 2004

A classification-based machine learning approach for the analysis of genome-wide expression data

scientific article

Acute exposure and chronic retention of aluminum in three vaccine schedules and effects of genetic and environmental variation

scientific article published on 05 December 2019

Altered DNA methylation in PAH deficient phenylketonuria.

scientific article published on 24 April 2015

Assessing the statistical significance of the achieved classification error of classifiers constructed using serum peptide profiles, and a prescription for random sampling repeated studies for massive high-throughput genomic and proteomic studies.

scientific article published on January 2005

Assessment of Protein Stability in Cerebrospinal Fluid Using Surface-Enhanced Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Protein Profiling

scientific article

Branch Length Heterogeneity Leads to Nonindependent Branch Length Estimates and Can Decrease the Efficiency of Methods of Phylogenetic Inference

article

Cellular factors associated with latency and spontaneous Epstein-Barr virus reactivation in B-lymphoblastoid cell lines.

scientific article

Challenges and opportunities for biological language modelling in biomedical high-throughput genomic and proteomic informatics

scientific article published in January 2004

Clinical decision modeling system

scientific article

Cures vs. Profits

DNA methylation in the pathophysiology of hyperphenylalaninemia in the PAH(enu2) mouse model of phenylketonuria.

scientific article published on 14 January 2016

Determining the statistical significance of survivorship prediction models.

scientific article

Differential hippocampal gene expression and pathway analysis in an etiology-based mouse model of major depressive disorder

scientific article published on 23 March 2015

Differential hippocampal gene expression and pathway analysis in an etiology-based mouse model of major depressive disorder.

scientific article published on 25 July 2014

Direct regulation of diurnal Drd3 expression and cocaine reward by NPAS2.

scientific article

Ebola

article published in 2015

Efficiency analysis of competing tests for finding differentially expressed genes in lung adenocarcinoma.

scientific article published on 14 July 2008

Escaping from the Felsenstein zone by detecting long branches in phylogenetic data

scientific article

Evaluation of the Consensus of Four Peptide Identification Algorithms for Tandem Mass Spectrometry Based Proteomics.

scientific article

Expression of three topologically distinct membrane proteins elicits unique stress response pathways in the yeast Saccharomyces cerevisiae

scientific article published on 10 March 2015

Feature Selection and Dimensionality Reduction in Genomics and Proteomics

Feature Selection for Classification of SELDI-TOF-MS Proteomic Profiles

scientific article published in January 2005

Finding optimal ingroup topologies and convexities when the choice of outgroups is not obvious.

scientific article published on June 1998

Gene expression patterns in isolated keloid fibroblasts

scientific article published in July 2006

Hepatic gene expression response to acute indomethacin exposure

scientific journal article

Heritability of oral microbial species in caries-active and caries-free twins

scientific article

Impact of catch-up vaccination on aluminum exposure due to new laws and post social distancing

scientific article published on 21 September 2020

Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

scientific article (publication date: 21 November 2000)

Intersession reproducibility of mass spectrometry profiles and its effect on accuracy of multivariate classification models

scientific article

Intron sliding in conserved gene families.

scientific article

Lung tissues in patients with systemic sclerosis have gene expression patterns unique to pulmonary fibrosis and pulmonary hypertension.

scientific article

Mechanism of transfer of functional microRNAs between mouse dendritic cells via exosomes.

scientific article published on 26 October 2011

Methylome repatterning in a mouse model of Maternal PKU Syndrome.

scientific article published on 23 August 2014

Microbial risk indicators of early childhood caries.

scientific article

Molecular overlap of fly circadian rhythms and human pancreatic cancer

scientific article

Null Model Selection, Compositional Bias, Character State Bias, and the Limits of Phylogenetic Information

article

Optimal outgroup analysis

article published in 1998

Optimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard Mixtures

scientific article published on June 2009

Overcoming confounded controls in the analysis of gene expression data from microarray experiments.

scientific article

Pathogenic Priming Likely Contributes to Serious and Critical Illness and Mortality in COVID-19 via Autoimmunity

scientific article published on 09 April 2020

Prediction of lymph node metastasis by analysis of gene expression profiles in primary lung adenocarcinomas.

scientific article published on June 2005

Prediction of severity and subtype of fibrosing disease using model informed by inflammation and extracellular matrix gene index

scientific article published on 23 October 2020

Profiling molecular changes induced by hydrogen treatment of lung allografts prior to procurement.

scientific article

Progression-Associated Genes in Astrocytoma Identified by Novel Microarray Gene Expression Data Reanalysis

article

Progression-associated genes in astrocytoma identified by novel microarray gene expression data reanalysis.

scientific article

Proteomic analysis of urine in kidney transplant patients with BK virus nephropathy

scientific article

Reconsideration of the immunotherapeutic pediatric safe dose levels of aluminum

scholarly article by James Lyons-Weiler & Robert Ricketson published July 2018 in Journal of Trace Elements in Medicine and Biology

Relative Incidence of Office Visits and Cumulative Rates of Billed Diagnoses Along the Axis of Vaccination

scientific article published on 22 November 2020

Relative apparent synapomorphy analysis (RASA). I: The statistical measurement of phylogenetic signal

scientific article

Serum Proteomic Profiling and Analysis

article

Variations in discovery-based preeclampsia candidate genes

scientific article

caGEDA: a web application for the integrated analysis of global gene expression patterns in cancer.

scientific article published on January 2004

List of works by James Lyons-Weiler

A New Microarray, Enriched in Pancreas and Pancreatic Cancer cDNAs to Identify Genes Relevant to Pancreatic Cancer

A classification-based machine learning approach for the analysis of genome-wide expression data

Acute exposure and chronic retention of aluminum in three vaccine schedules and effects of genetic and environmental variation

Altered DNA methylation in PAH deficient phenylketonuria.

Assessing the statistical significance of the achieved classification error of classifiers constructed using serum peptide profiles, and a prescription for random sampling repeated studies for massive high-throughput genomic and proteomic studies.

Assessment of Protein Stability in Cerebrospinal Fluid Using Surface-Enhanced Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Protein Profiling

Branch Length Heterogeneity Leads to Nonindependent Branch Length Estimates and Can Decrease the Efficiency of Methods of Phylogenetic Inference

Cellular factors associated with latency and spontaneous Epstein-Barr virus reactivation in B-lymphoblastoid cell lines.

Challenges and opportunities for biological language modelling in biomedical high-throughput genomic and proteomic informatics

Clinical decision modeling system

Cures vs. Profits

DNA methylation in the pathophysiology of hyperphenylalaninemia in the PAH(enu2) mouse model of phenylketonuria.

Determining the statistical significance of survivorship prediction models.

Differential hippocampal gene expression and pathway analysis in an etiology-based mouse model of major depressive disorder

Differential hippocampal gene expression and pathway analysis in an etiology-based mouse model of major depressive disorder.

Direct regulation of diurnal Drd3 expression and cocaine reward by NPAS2.

Ebola

Efficiency analysis of competing tests for finding differentially expressed genes in lung adenocarcinoma.

Escaping from the Felsenstein zone by detecting long branches in phylogenetic data

Evaluation of the Consensus of Four Peptide Identification Algorithms for Tandem Mass Spectrometry Based Proteomics.

Expression of three topologically distinct membrane proteins elicits unique stress response pathways in the yeast Saccharomyces cerevisiae

Feature Selection and Dimensionality Reduction in Genomics and Proteomics

Feature Selection for Classification of SELDI-TOF-MS Proteomic Profiles

Finding optimal ingroup topologies and convexities when the choice of outgroups is not obvious.

Gene expression patterns in isolated keloid fibroblasts

Hepatic gene expression response to acute indomethacin exposure

Heritability of oral microbial species in caries-active and caries-free twins

Impact of catch-up vaccination on aluminum exposure due to new laws and post social distancing

Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

Intersession reproducibility of mass spectrometry profiles and its effect on accuracy of multivariate classification models

Intron sliding in conserved gene families.

Lung tissues in patients with systemic sclerosis have gene expression patterns unique to pulmonary fibrosis and pulmonary hypertension.

Mechanism of transfer of functional microRNAs between mouse dendritic cells via exosomes.

Methylome repatterning in a mouse model of Maternal PKU Syndrome.

Microbial risk indicators of early childhood caries.

Molecular overlap of fly circadian rhythms and human pancreatic cancer

Null Model Selection, Compositional Bias, Character State Bias, and the Limits of Phylogenetic Information

Optimal outgroup analysis

Optimization of the Use of Consensus Methods for the Detection and Putative Identification of Peptides via Mass Spectrometry Using Protein Standard Mixtures

Overcoming confounded controls in the analysis of gene expression data from microarray experiments.

Pathogenic Priming Likely Contributes to Serious and Critical Illness and Mortality in COVID-19 via Autoimmunity

Prediction of lymph node metastasis by analysis of gene expression profiles in primary lung adenocarcinomas.

Prediction of severity and subtype of fibrosing disease using model informed by inflammation and extracellular matrix gene index

Profiling molecular changes induced by hydrogen treatment of lung allografts prior to procurement.

Progression-Associated Genes in Astrocytoma Identified by Novel Microarray Gene Expression Data Reanalysis

Progression-associated genes in astrocytoma identified by novel microarray gene expression data reanalysis.

Proteomic analysis of urine in kidney transplant patients with BK virus nephropathy

Reconsideration of the immunotherapeutic pediatric safe dose levels of aluminum

Relative Incidence of Office Visits and Cumulative Rates of Billed Diagnoses Along the Axis of Vaccination

Relative apparent synapomorphy analysis (RASA). I: The statistical measurement of phylogenetic signal

Serum Proteomic Profiling and Analysis

Variations in discovery-based preeclampsia candidate genes

caGEDA: a web application for the integrated analysis of global gene expression patterns in cancer.