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List of works by Stefan Verhoeven

3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine

scientific article

3D-e-Chem: Structural Cheminformatics Workflows for Computer-Aided Drug Discovery.

scientific article published on 16 January 2018

A community resource for paired genomic and metabolomic data mining

scientific article published in 2021

A prospective cross-screening study on G-protein-coupled receptors: lessons learned in virtual compound library design

scientific article

Automatic Compound Annotation from Mass Spectrometry Data Using MAGMa

scientific article

Automatic chemical structure annotation of an LC-MS(n) based metabolic profile from green tea.

scientific article published on 31 May 2013

CoPub Mapper: mining MEDLINE based on search term co-publication

scientific article

CoPub update: CoPub 5.0 a text mining system to answer biological questions

scientific article published on 27 May 2011

GPCRDB: information system for G protein-coupled receptors

scientific article

Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining

scientific article (publication date: 4 February 2013)

In silico prediction and automatic LC-MS(n) annotation of green tea metabolites in urine

scientific article

Literature-based compound profiling: application to toxicogenomics

scientific article

Preprocessing of hydrological models’ input in eWaterCycle with ESMValTool

Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs

Substructure-based annotation of high-resolution multistage MS(n) spectral trees

scientific article published in October 2012

The eWaterCycle platform for open and FAIR hydrological collaboration

scientific article published in 2022

Towards Open and FAIR Hydrological Modelling with eWaterCycle

Using modular 3D digital earth applications based on point clouds for the study of complex sites

matchms - processing and similarity evaluation of mass spectrometry data.

scientific article published on 31 August 2020

ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs

scientific article

sv-callers: a highly portable parallel workflow for structural variant detection in whole-genome sequence data

scientific article published on 06 January 2020

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