List of works - Weibo Xie

A dynamic gene expression atlas covering the entire life cycle of rice

scientific article

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

scientific article published on September 2010

A high-density SNP genotyping array for rice biology and molecular breeding

scientific article

A whole-genome SNP array (RICE6K) for genomic breeding in rice

scientific article published on 13 September 2013

ATAC-seq with unique molecular identifiers improves quantification and footprinting

scientific article published on 13 November 2020

An expression quantitative trait loci-guided co-expression analysis for constructing regulatory network using a rice recombinant inbred line population

scientific article published on 13 January 2014

Analysis of trait heritability in functionally partitioned rice genomes

scientific article published on 28 June 2019

Aspartic proteases gene family in rice: Gene structure and expression, predicted protein features and phylogenetic relation

scientific article

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

scientific article

Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice

scientific article published on 16 March 2014

Characterization of the DNA accessibility of chloroplast genomes in grasses

scientific article published in 2024

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

scientific article

Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice

scientific article published on 10 March 2009

Comprehensive sequence and whole-life-cycle expression profile analysis of the phosphate transporter gene family in rice.

scientific article published on 10 August 2011

Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method ⬇️

scientific article published on April 26, 2011

Exploring the rice dispensable genome using a metagenome-like assembly strategy

scientific article

Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice

scientific article

Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica).

scientific article published on 5 March 2009

Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers

scientific article

Genetic Architecture of Natural Variation in Rice Chlorophyll Content Revealed by a Genome-Wide Association Study

scientific article published on 05 March 2015

Genetic basis of sRNA quantitative variation analyzed using an experimental population derived from an elite rice hybrid

scientific article

Genetic composition of yield heterosis in an elite rice hybrid

scientific article

Genome-wide Association Study (GWAS) of mesocotyl elongation based on re-sequencing approach in rice

scientific article published on 11 September 2015

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

scientific article published on 08 June 2014

Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).

scientific article published on 4 April 2018

Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.).

scientific article

Identification of optimal prediction models using multi-omic data for selecting hybrid rice

scientific article published on 25 March 2019

Identification of quantitative trait loci for phosphorus use efficiency traits in rice using a high density SNP map

scientific article

KT/HAK/KUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa).

scientific article published on 23 September 2008

Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa).

scientific article published on 12 June 2015

Molecular analyses of the rice glutamate dehydrogenase gene family and their response to nitrogen and phosphorous deprivation

scientific article published on 9 May 2009

Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice

scientific article published on 14 October 2009

Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice

scientific article published on 19 March 2013

Natural variation in the sequence of SNAC1 and its expression level polymorphism in rice Germplasms under drought stress

scientific article published on 28 September 2014

OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice.

scientific article

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.

scientific article

Pervasive misannotation of microexons that are evolutionarily conserved and crucial for gene function in plants

scientific article published on 10 February 2022

QTL scanning for rice yield using a whole genome SNP array

scientific article published on 20 August 2013

RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice

Reasons for lower transformation efficiency in indica rice using Agrobacterium tumefaciens-mediated transformation: lessons from transformation assays and genome-wide expression profiling.

scientific article

Rice functional genomics research: progress and implications for crop genetic improvement

scientific article

Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance.

scientific article published on 15 April 2008

RiceVarMap: a comprehensive database of rice genomic variations

scientific article

Sequence and expression analysis of the thioredoxin protein gene family in rice

scientific article published on 20 May 2008

Single feature polymorphisms between two rice cultivars detected using a median polish method

scientific article

The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control Heading Date in Rice under Long-Day Conditions

scientific article published on 21 September 2018

The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis

scientific article

Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice

scientific article

Transcriptome response to nitrogen starvation in rice

scientific article published on 01 September 2012

Transcriptome-based analysis of mitogen-activated protein kinase cascades in the rice response to Xanthomonas oryzae infection.

scientific article

List of works by Weibo Xie

A dynamic gene expression atlas covering the entire life cycle of rice

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage

A high-density SNP genotyping array for rice biology and molecular breeding

A whole-genome SNP array (RICE6K) for genomic breeding in rice

ATAC-seq with unique molecular identifiers improves quantification and footprinting

An expression quantitative trait loci-guided co-expression analysis for constructing regulatory network using a rice recombinant inbred line population

Analysis of trait heritability in functionally partitioned rice genomes

Aspartic proteases gene family in rice: Gene structure and expression, predicted protein features and phylogenetic relation

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice

Characterization of the DNA accessibility of chloroplast genomes in grasses

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice

Comprehensive sequence and whole-life-cycle expression profile analysis of the phosphate transporter gene family in rice.

Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method ⬇️

Exploring the rice dispensable genome using a metagenome-like assembly strategy

Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice

Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica).

Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers

Genetic Architecture of Natural Variation in Rice Chlorophyll Content Revealed by a Genome-Wide Association Study

Genetic basis of sRNA quantitative variation analyzed using an experimental population derived from an elite rice hybrid

Genetic composition of yield heterosis in an elite rice hybrid

Genome-wide Association Study (GWAS) of mesocotyl elongation based on re-sequencing approach in rice

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).

Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.).

Identification of optimal prediction models using multi-omic data for selecting hybrid rice

Identification of quantitative trait loci for phosphorus use efficiency traits in rice using a high density SNP map

KT/HAK/KUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa).

Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa).

Molecular analyses of the rice glutamate dehydrogenase gene family and their response to nitrogen and phosphorous deprivation

Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice

Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice

Natural variation in the sequence of SNAC1 and its expression level polymorphism in rice Germplasms under drought stress

OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice.

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.

Pervasive misannotation of microexons that are evolutionarily conserved and crucial for gene function in plants

QTL scanning for rice yield using a whole genome SNP array

RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice

Reasons for lower transformation efficiency in indica rice using Agrobacterium tumefaciens-mediated transformation: lessons from transformation assays and genome-wide expression profiling.

Rice functional genomics research: progress and implications for crop genetic improvement

Rice gene network inferred from expression profiling of plants overexpressing OsWRKY13, a positive regulator of disease resistance.

RiceVarMap: a comprehensive database of rice genomic variations

Sequence and expression analysis of the thioredoxin protein gene family in rice

Single feature polymorphisms between two rice cultivars detected using a median polish method

The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control Heading Date in Rice under Long-Day Conditions

The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis

Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice

Transcriptome response to nitrogen starvation in rice

Transcriptome-based analysis of mitogen-activated protein kinase cascades in the rice response to Xanthomonas oryzae infection.