List of works - Takanori Kigawa

A B-box 2 surface patch important for TRIM5alpha self-association, capsid binding avidity, and retrovirus restriction

scientific article published on 05 August 2009

A Multiphysics Model of In Vitro Transcription Coupling Enzymatic Reaction and Precipitation Formation ⬇️

scientific article published on January 18, 2012

A highly efficient cell-free protein synthesis system from Escherichia coli

scientific article published on 01 August 1996

A new modeling method in feature construction for the HSQC spectra screening problem.

scientific article

A new protein engineering approach combining chemistry and biology, part I; site-specific incorporation of 4-iodo-L-phenylalanine in vitro by using misacylated suppressor tRNAPhe

scientific article published in October 2006

A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C

scientific article

A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors

scientific article

A practical method for cell-free protein synthesis to avoid stable isotope scrambling and dilution ⬇️

scientific article published on January 20, 2011

A pre-metazoan origin of the CRK gene family and co-opted signaling network

scientific article published on 30 September 2016

Aberrant assembly of RNA recognition motif 1 links to pathogenic conversion of TAR DNA-binding protein of 43 kDa (TDP-43)

scientific article published on 4 April 2013

Accurate and molecular-size-tolerant NMR quantitation of diverse components in solution

scientific article published on 17 February 2016

Active intermediates of polyhydroxyalkanoate synthase from Aeromonas caviae in polymerization reaction

scientific article

Advances in stable isotope assisted labeling strategies with information science.

scientific article

Amino-acid selective isotope labeling enables simultaneous overlapping signal decomposition and information extraction from NMR spectra

scientific article published on 30 January 2020

An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure

scientific article published on 20 March 2006

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database

scientific article

An economical method for producing stable-isotope labeled proteins by the E. coli cell-free system ⬇️

scientific article published on November 4, 2010

An engineered Escherichia coli tyrosyl-tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system

scientific article

Analysis of protein functions through a bacterial cell-free protein expression system

scientific article published in January 2010

Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases.

scientific article published on 21 December 2016

Automated system for high-throughput protein production using the dialysis cell-free method

scientific article published on 5 August 2009

Cell-free protein preparation through prokaryotic transcription-translation methods

scientific article published on 01 January 2010

Cell-free protein production system with the E. coli crude extract for determination of protein folds

scientific article published on 01 January 2010

Cell-free synthesis and amino acid-selective stable isotope labeling of proteins for NMR analysis.

scientific article

Cell-free synthesis system suitable for disulfide-containing proteins.

scientific article published on 3 January 2013

Co-expression of two polyhydroxyalkanoate synthase subunits from Synechocystis sp. PCC 6803 by cell-free synthesis and their specific activity for polymerization of 3-hydroxybutyryl-coenzyme A.

scientific article published on 6 February 2015

Cold shock proteins improve E. coli cell-free synthesis in terms of soluble yields of aggregation-prone proteins

scientific article published on 12 March 2020

Comparison of residual alpha- and beta-structures between two intrinsically disordered proteins by using NMR.

scientific article published on 16 December 2014

Contribution of E3-ubiquitin ligase activity to HIV-1 restriction by TRIM5alpha(rh): structure of the RING domain of TRIM5alpha

scientific article

Crystal structure of Sulfolobus tokodaii Sua5 complexed with L-threonine and AMPPNP

scientific article

Crystal structure of the RUN domain of the RAP2-interacting protein x

scientific journal article

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution ⬇️

scientific article published on 03 October 2012

Direct introduction of neomycin phosphotransferase II protein into apple leaves to confer kanamycin resistance

scientific article published on 26 November 2016

Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis

scientific article published on April 1, 1998

Effect of Glu12-His89 Interaction on Dynamic Structures in HIV-1 p17 Matrix Protein Elucidated by NMR

scientific article

Effects of Escherichia coli ribosomal protein S12 mutations on cell-free protein synthesis.

scientific article published in March 2004

Flexible and rigid structures in HIV-1 p17 matrix protein monitored by relaxation and amide proton exchange with NMR.

scientific article published on 26 December 2013

Impact of cellular health conditions on the protein folding state in mammalian cells.

scientific article

Improving cell-free protein synthesis for stable-isotope labeling.

scientific article

Intracellular Delivery of Proteins via Fusion Peptides in Intact Plants

scientific article

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

scientific article

Long-range effects of tag sequence on marginally stabilized structure in HIV-1 p24 capsid protein monitored using NMR.

scientific article published on 21 June 2014

Molecular actions of two synthetic brassinosteroids, iso-carbaBL and 6-deoxoBL, which cause altered physiological activities between Arabidopsis and rice

scientific article

Molecular level evaluation on HEMA interaction with a collagen model.

scientific article

Monomer-collagen interactions studied by saturation transfer difference NMR

scientific article published on 22 January 2013

Multiple inhibitory factor removal from an Escherichia coli cell extract improves cell-free protein synthesis.

scientific article

NMR and X-ray structures of the putative sterol carrier protein 2 from Thermus thermophilus HB8 show conformational changes

scientific article published on 5 October 2010

NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana

scientific article published in June 2004

NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana

scientific article published in June 2004

NMR solution structure of human vaccinia-related kinase 1 (VRK1) reveals the C-terminal tail essential for its structural stability and autocatalytic activity

scientific article

NMR solution structures of actin depolymerizing factor homology domains

scientific article

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

scientific article

Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator

scientific article

Peptide-Based Polyion Complex Vesicles That Deliver Enzymes into Intact Plants To Provide Antibiotic Resistance without Genetic Modification

scientific article published on 14 December 2020

Phosphatidylinositol monophosphate-binding interface in the oomycete RXLR effector AVR3a is required for its stability in host cells to modulate plant immunity

scientific article

RING domain mutations uncouple TRIM5α restriction of HIV-1 from inhibition of reverse transcription and acceleration of uncoating

scientific article published on 23 November 2011

Rapid biochemical synthesis of 11C-labeled single chain variable fragment antibody for immuno-PET by cell-free protein synthesis ⬇️

scientific article published on September 25, 2012

Regioselective carbon-carbon bond formation in proteins with palladium catalysis; new protein chemistry by organometallic chemistry

scientific article published in January 2006

Role of 2-hydroxyethyl methacrylate in the interaction of dental monomers with collagen studied by saturation transfer difference NMR.

scientific article published on 17 January 2014

Simplification of the genetic code: restricted diversity of genetically encoded amino acids

scientific article

Simultaneous introduction of multiple biomacromolecules into plant cells using a cell-penetrating peptide nanocarrier

scientific article published on 08 September 2020

Site-Specific Functionalization of Proteins by Organopalladium Reactions

scholarly article by Koichiro Kodama published in January 2007

Site-specific incorporation of 4-iodo-L-phenylalanine through opal suppression

scientific article published on 21 May 2010

Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65

scientific article

Solution structure of a BolA-like protein from Mus musculus

scientific article

Solution structure of an Arabidopsis WRKY DNA binding domain

scientific article

Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form

scientific article

Solution structure of histone chaperone ANP32B: interaction with core histones H3-H4 through its acidic concave domain

scientific article

Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1

scientific article

Solution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein

scientific article

Solution structure of the GUCT domain from human RNA helicase II/Gu beta reveals the RRM fold, but implausible RNA interactions

scientific article

Solution structure of the PWWP domain of the hepatoma-derived growth factor family

scientific journal article

Solution structure of the RNA binding domain in the human muscleblind-like protein 2

scientific article

Solution structure of the RWD domain of the mouse GCN2 protein

scientific article published on August 2004

Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16)

scientific article

Solution structure of the SWIRM domain of human histone demethylase LSD1

scientific article

Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes.

scientific article published in April 2005

Solution structure of the antifreeze-like domain of human sialic acid synthase

scientific article

Solution structure of the catalytic domain of the mitochondrial protein ICT1 that is essential for cell vitality

scientific article

Solution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily

scientific article

Solution structure of the epsin N-terminal homology (ENTH) domain of human epsin

scientific article

Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4.

scientific article published on 24 September 2008

Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment

scientific article (publication date: February 2017)

Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.

scientific article published in April 2005

Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold.

scientific article published in August 2005

Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana

scientific article

Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode

scientific article

Solution structure of the splicing factor motif of the human Prp18 protein

scholarly article by Fahu He published in December 2011

Solution structure of the zinc finger HIT domain in protein FON

scientific article

Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT.

scientific article published on 24 March 2015

Solution structures of the double-stranded RNA-binding domains from RNA helicase A

scientific article

Stable isotope labeling strategy based on coding theory.

scientific article published on 21 August 2015

Structural Basis for Sequence-specific DNA Recognition by an Arabidopsis WRKY Transcription Factor

scientific article

Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway

scientific article

Structural and functional differences of SWIRM domain subtypes

scientific article

Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms

scientific article

Structural basis for the dual RNA-recognition modes of human Tra2- RRM

scientific article

Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2

scientific article

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3

scientific article

Structural insight into the interaction of ADP-ribose with the PARP WWE domains

scientific article published on 22 September 2012

Structural insight into the zinc finger CW domain as a histone modification reader

scientific article

Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains

scientific article published on 03 January 2008

Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

scientific article published on January 2011

The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange

scientific article

The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma

scientific article

The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein

scientific article

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

scientific article

The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain

scientific journal article

ZF21 Protein, a Regulator of the Disassembly of Focal Adhesions and Cancer Metastasis, Contains a Novel Noncanonical Pleckstrin Homology Domain

scientific article

List of works by Takanori Kigawa

A B-box 2 surface patch important for TRIM5alpha self-association, capsid binding avidity, and retrovirus restriction

A Multiphysics Model of In Vitro Transcription Coupling Enzymatic Reaction and Precipitation Formation ⬇️

A highly efficient cell-free protein synthesis system from Escherichia coli

A new modeling method in feature construction for the HSQC spectra screening problem.

A new protein engineering approach combining chemistry and biology, part I; site-specific incorporation of 4-iodo-L-phenylalanine in vitro by using misacylated suppressor tRNAPhe

A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C

A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors

A practical method for cell-free protein synthesis to avoid stable isotope scrambling and dilution ⬇️

A pre-metazoan origin of the CRK gene family and co-opted signaling network

Aberrant assembly of RNA recognition motif 1 links to pathogenic conversion of TAR DNA-binding protein of 43 kDa (TDP-43)

Accurate and molecular-size-tolerant NMR quantitation of diverse components in solution

Active intermediates of polyhydroxyalkanoate synthase from Aeromonas caviae in polymerization reaction

Advances in stable isotope assisted labeling strategies with information science.

Amino-acid selective isotope labeling enables simultaneous overlapping signal decomposition and information extraction from NMR spectra

An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database

An economical method for producing stable-isotope labeled proteins by the E. coli cell-free system ⬇️

An engineered Escherichia coli tyrosyl-tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system

Analysis of protein functions through a bacterial cell-free protein expression system

Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases.

Automated system for high-throughput protein production using the dialysis cell-free method

Cell-free protein preparation through prokaryotic transcription-translation methods

Cell-free protein production system with the E. coli crude extract for determination of protein folds

Cell-free synthesis and amino acid-selective stable isotope labeling of proteins for NMR analysis.

Cell-free synthesis system suitable for disulfide-containing proteins.

Co-expression of two polyhydroxyalkanoate synthase subunits from Synechocystis sp. PCC 6803 by cell-free synthesis and their specific activity for polymerization of 3-hydroxybutyryl-coenzyme A.

Cold shock proteins improve E. coli cell-free synthesis in terms of soluble yields of aggregation-prone proteins

Comparison of residual alpha- and beta-structures between two intrinsically disordered proteins by using NMR.

Contribution of E3-ubiquitin ligase activity to HIV-1 restriction by TRIM5alpha(rh): structure of the RING domain of TRIM5alpha

Crystal structure of Sulfolobus tokodaii Sua5 complexed with L-threonine and AMPPNP

Crystal structure of the RUN domain of the RAP2-interacting protein x

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution ⬇️

Direct introduction of neomycin phosphotransferase II protein into apple leaves to confer kanamycin resistance

Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis

Effect of Glu12-His89 Interaction on Dynamic Structures in HIV-1 p17 Matrix Protein Elucidated by NMR

Effects of Escherichia coli ribosomal protein S12 mutations on cell-free protein synthesis.

Flexible and rigid structures in HIV-1 p17 matrix protein monitored by relaxation and amide proton exchange with NMR.

Impact of cellular health conditions on the protein folding state in mammalian cells.

Improving cell-free protein synthesis for stable-isotope labeling.

Intracellular Delivery of Proteins via Fusion Peptides in Intact Plants

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

Long-range effects of tag sequence on marginally stabilized structure in HIV-1 p24 capsid protein monitored using NMR.

Molecular actions of two synthetic brassinosteroids, iso-carbaBL and 6-deoxoBL, which cause altered physiological activities between Arabidopsis and rice

Molecular level evaluation on HEMA interaction with a collagen model.

Monomer-collagen interactions studied by saturation transfer difference NMR

Multiple inhibitory factor removal from an Escherichia coli cell extract improves cell-free protein synthesis.

NMR and X-ray structures of the putative sterol carrier protein 2 from Thermus thermophilus HB8 show conformational changes

NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana

NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana

NMR solution structure of human vaccinia-related kinase 1 (VRK1) reveals the C-terminal tail essential for its structural stability and autocatalytic activity

NMR solution structures of actin depolymerizing factor homology domains

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator

Peptide-Based Polyion Complex Vesicles That Deliver Enzymes into Intact Plants To Provide Antibiotic Resistance without Genetic Modification

Phosphatidylinositol monophosphate-binding interface in the oomycete RXLR effector AVR3a is required for its stability in host cells to modulate plant immunity

RING domain mutations uncouple TRIM5α restriction of HIV-1 from inhibition of reverse transcription and acceleration of uncoating

Rapid biochemical synthesis of 11C-labeled single chain variable fragment antibody for immuno-PET by cell-free protein synthesis ⬇️

Regioselective carbon-carbon bond formation in proteins with palladium catalysis; new protein chemistry by organometallic chemistry

Role of 2-hydroxyethyl methacrylate in the interaction of dental monomers with collagen studied by saturation transfer difference NMR.

Simplification of the genetic code: restricted diversity of genetically encoded amino acids

Simultaneous introduction of multiple biomacromolecules into plant cells using a cell-penetrating peptide nanocarrier

Site-Specific Functionalization of Proteins by Organopalladium Reactions

Site-specific incorporation of 4-iodo-L-phenylalanine through opal suppression

Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65

Solution structure of a BolA-like protein from Mus musculus

Solution structure of an Arabidopsis WRKY DNA binding domain

Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form

Solution structure of histone chaperone ANP32B: interaction with core histones H3-H4 through its acidic concave domain

Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1

Solution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein

Solution structure of the GUCT domain from human RNA helicase II/Gu beta reveals the RRM fold, but implausible RNA interactions

Solution structure of the PWWP domain of the hepatoma-derived growth factor family

Solution structure of the RNA binding domain in the human muscleblind-like protein 2

Solution structure of the RWD domain of the mouse GCN2 protein

Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16)

Solution structure of the SWIRM domain of human histone demethylase LSD1

Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes.

Solution structure of the antifreeze-like domain of human sialic acid synthase

Solution structure of the catalytic domain of the mitochondrial protein ICT1 that is essential for cell vitality