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List of works by Ard Louis

A nucleotide-level coarse-grained model of RNA

scientific article published on 01 June 2014

A tractable genotype-phenotype map modelling the self-assembly of protein quaternary structure.

scientific article published on 9 April 2014

Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.

scientific article

Characterizing the Motion of Jointed DNA Nanostructures Using a Coarse-Grained Model.

scientific article published on 30 October 2017

Characterizing the bending and flexibility induced by bulges in DNA duplexes.

scientific article published in April 2015

Coarse-grained modelling of supercoiled RNA.

scientific article published on December 2015

Coarse-grained simulations of DNA overstretching.

scientific article published in February 2013

Coarse-graining DNA for simulations of DNA nanotechnology.

scientific article published on 11 October 2013

Colloid-polymer mixtures in the protein limit

scientific article published on 14 February 2003

Contingency, convergence and hyper-astronomical numbers in biological evolution

scientific article published on 8 February 2016

Crystallization and phase separation in nonadditive binary hard-sphere mixtures

scientific article published on 01 February 2000

DNA cruciform arms nucleate through a correlated but asynchronous cooperative mechanism

scientific article published on 17 September 2012

DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization.

scientific article published on 8 June 2015

DNA nanotweezers studied with a coarse-grained model of DNA.

scientific article published on 26 April 2010

Density profiles and solvation forces for a Yukawa fluid in a slit pore.

scientific article published in May 2008

Density-functional study of interfacial properties of colloid-polymer mixtures

scientific article published on 01 April 2005

Direct Simulation of the Self-Assembly of a Small DNA Origami.

scientific article published on 14 January 2016

Dynamic colloidal stabilization by nanoparticle halos.

scientific article published on 7 December 2004

Dynamics of solutes with hydrodynamic interactions: comparison between Brownian dynamics and stochastic rotation dynamics simulations.

scientific article

Effect of Bending Rigidity on the Knotting of a Polymer under Tension.

scientific article published on 8 November 2012

Effective forces in colloidal mixtures: from depletion attraction to accumulation repulsion

scientific article published on 13 June 2002

Effects of interparticle attractions on colloidal sedimentation

scientific article published on 11 February 2010

Epistasis can lead to fragmented neutral spaces and contingency in evolution.

scientific article published on 7 December 2011

Evolutionary dynamics in a simple model of self-assembly.

scientific article published on 13 June 2011

Extracting bulk properties of self-assembling systems from small simulations

scientific article published on 23 February 2010

Force-Induced Rupture of a DNA Duplex: From Fundamentals to Force Sensors.

scientific article published on 17 November 2015

Formation of dodecagonal quasicrystals in two-dimensional systems of patchy particles.

scientific article published in February 2012

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability

scientific article

How Péclet number affects microstructure and transient cluster aggregation in sedimenting colloidal suspensions

scientific article published on 01 February 2012

Hydrodynamic and Brownian Fluctuations in Sedimenting Suspensions

scientific article (publication date: 23 November 2004)

Hydrodynamics of confined colloidal fluids in two dimensions.

scientific article published on 12 May 2009

Influence of polymer-excluded volume on the phase-behavior of colloid-polymer mixtures

scientific article published on 03 September 2002

Influence of solvent quality on effective pair potentials between polymers in solution

scientific article published on 25 April 2003

Influence of solvent quality on polymer solutions: a Monte Carlo study of bulk and interfacial properties.

scientific article published in July 2004

Inhibition of protein crystallization by evolutionary negative design

scientific article

Interplay between hydrodynamic and Brownian fluctuations in sedimenting colloidal suspensions

scientific article published on 22 January 2008

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.

scientific article published on June 2015

Knot-controlled ejection of a polymer from a virus capsid.

scientific article published on 23 February 2009

Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation

scientific article published on 22 September 2016

Measuring colloidal interactions with confocal microscopy.

scientific article

Modelling the self-assembly of virus capsids.

scientific article published on 23 February 2010

Modelling toehold-mediated RNA strand displacement.

scientific article

Monodisperse self-assembly in a model with protein-like interactions

scientific article published on 01 November 2009

Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly.

scientific article published in April 2018

Nonmonotonic variation with salt concentration of the second virial coefficient in protein solutions

scientific article published on 16 May 2003

On the biophysics and kinetics of toehold-mediated DNA strand displacement

scientific article published on 09 September 2013

Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker.

scientific article published on 5 March 2013

Phase diagram of model anisotropic particles with octahedral symmetry

scientific article published on 01 August 2007

Phase separation of a model binary polymer solution in an external field

scientific article published on 01 March 2006

Plectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA.

scientific article

Re-entrant phase behavior for systems with competition between phase separation and self-assembly

article

Representability problems for coarse-grained water potentials.

scientific article published in April 2007

Reversible self-assembly of patchy particles into monodisperse icosahedral clusters

scientific article published on 01 August 2007

Self-assembly and evolution of homomeric protein complexes.

scientific article published on 18 March 2009

Self-assembly of monodisperse clusters: Dependence on target geometry

scientific article published on 01 November 2009

Self-assembly, modularity, and physical complexity

scientific article published on 27 August 2010

Sequence-dependent thermodynamics of a coarse-grained DNA model.

scientific article

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model

scientific article published on 01 February 2011

The arrival of the frequent: how bias in genotype-phenotype maps can steer populations to local optima

scientific article

The crossover from single file to Fickian diffusion.

scientific article

The effect of scale-free topology on the robustness and evolvability of genetic regulatory networks

scientific article published on 07 August 2010

The effect of topology on the structure and free energy landscape of DNA kissing complexes.

scientific article

The role of loop stacking in the dynamics of DNA hairpin formation.

scientific article published on 2 December 2014

The self-assembly of DNA Holliday junctions studied with a minimal model

scientific article published on 01 February 2009

The stability of a crystal with diamond structure for patchy particles with tetrahedral symmetry.

scientific article published on June 2010

The structure of the genotype-phenotype map strongly constrains the evolution of non-coding RNA.

scientific article published in December 2015

Theory of asymmetric nonadditive binary hard-sphere mixtures

scientific article published on 26 October 2001

Zigzag transitions and nonequilibrium pattern formation in colloidal chains.

scientific article published in October 2013