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List of works by Peter J Ralph

"Super-quenching" state protects Symbiodinium from thermal stress - Implications for coral bleaching.

scientific article

A Global Assessment of the Chemical Recalcitrance of Seagrass Tissues: Implications for Long-Term Carbon Sequestration

scientific article

A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model

article

A dynamic model of the cellular carbon to chlorophyll ratio applied to a batch culture and a continental shelf ecosystem

article

A guide to Open-JIP, a low-cost open-source chlorophyll fluorometer

scientific article published on 20 September 2019

A miniature bioassay for testing the acute phytotoxicity of photosystem II herbicides on seagrass

scientific article

A molecular physiology basis for functional diversity of hydrogen peroxide production amongst Symbiodinium spp. (Dinophyceae)

scientific article published in 2017

A multi-trait systems approach reveals a response cascade to bleaching in corals.

scientific article

A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri

scientific article published on 24 December 2017

A novel mechanism for host-mediated photoprotection in endosymbiotic foraminifera.

scientific article

A split flow chamber with artificial sediment to examine the below-ground microenvironment of aquatic macrophytes

article

Action spectra of oxygen production and chlorophyll a fluorescence in the green microalga Nannochloropsis oculata.

scientific article

An empirical process model to predict microalgal carbon fixation rates in photobioreactors

An explorable public transcriptomics compendium for eukaryotic microalgae

Antarctic coastal microalgal primary production and photosynthesis

scholarly article by Andrew McMinn et al published 28 August 2012 in Marine Biology

Australian vegetated coastal ecosystems as global hotspots for climate change mitigation

scientific article published on 02 October 2019

BASTA – Taxonomic classification of sequences and sequence bins using last common ancestor estimations

scientific article published in 2018

Bacterioplankton Dynamics within a Large Anthropogenically Impacted Urban Estuary.

scientific article published in January 2015

CORAL PHOTOBIOLOGY STUDIED WITH A NEW IMAGING PULSE AMPLITUDE MODULATED FLUOROMETER1

Can macroalgae contribute to blue carbon? An Australian perspective

article

Can we manage coastal ecosystems to sequester more blue carbon?

scientific article published in 2017

Carbon-concentrating mechanisms in seagrasses.

scientific article published in June 2017

Cell Cycle Dynamics of Cultured Coral Endosymbiotic Microalgae (Symbiodinium) Across Different Types (Species) Under Alternate Light and Temperature Conditions

scientific article published on 8 January 2018

Chemotaxis by natural populations of coral reef bacteria

scientific article

ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection

scientific article

Chlorophyll Fluorescence in Reef Building Corals

Chloroplast genomics: Expanding resources for an evolutionary conserved miniature molecule with enigmatic applications

scientific article published in 2016

Combined effects of temperature and the herbicide diuron on Photosystem II activity of the tropical seagrass Halophila ovalis

scientific article

Comparison of marine macrophytes for their contributions to blue carbon sequestration

scientific article published on November 2015

Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef).

scientific article published on 12 February 2018

Contrasting microbial assemblages in adjacent water masses associated with the East Australian Current.

scientific article

Coral bleaching: the role of the host

scientific article

Corrigendum: Regional and Microenvironmental Scale Characterization of the <i>Zostera muelleri</i> Seagrass Microbiome

publication published on 10 March 2021

Desiccation stress in two intertidal beachrock biofilms

scientific article published in 2014

Detachment and flow cytometric quantification of seagrass-associated bacteria

scientific article

Development of a toxicity identification evaluation protocol using chlorophyll-a fluorescence in a marine microalga.

scientific article published in May 2008

Development of an Efficient Protein Extraction Method Compatible with LC-MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis

scientific article published on 15 August 2017

Diel and seasonal changes in fluorescence rise kinetics of three scleractinian corals

scientific article published on 01 July 2005

Diel variation of chlorophyll-a fluorescence, phytoplankton pigments and productivity in the Sub-Antarctic and Polar Front Zones south of Tasmania, Australia

article

Dimethylsulfoniopropionate, superoxide dismutase and glutathione as stress response indicators in three corals under short-term hyposalinity stress.

scientific article published in February 2016

EFFECTS OF MODERATE HEAT STRESS AND DISSOLVED INORGANIC CARBON CONCENTRATION ON PHOTOSYNTHESIS AND RESPIRATION OF SYMBIODINIUM SP. (DINOPHYCEAE) IN CULTURE AND IN SYMBIOSIS(1).

scientific article

Ecology: a niche for cyanobacteria containing chlorophyll d.

scientific article

Effect of carbon limitation on photosynthetic electron transport in Nannochloropsis oculata.

scientific article published on 21 February 2018

Effect of reduced irradiance on 13C uptake, gene expression and protein activity of the seagrass Zostera muelleri

scientific article published on 06 June 2019

Effective light absorption and absolute electron transport rates in the coral Pocillopora damicornis.

scientific article

Effects of flow and colony morphology on the thermal boundary layer of corals

scientific article

Effects of small-scale, shading-induced seagrass loss on blue carbon storage: Implications for management of degraded seagrass ecosystems

scientific article published in 2018

Electricity and biomass production in a bacteria- Chlorella based microbial fuel cell treating wastewater

article by Audrey S Commault et al published July 2017 in Journal of Power Sources

Endolithic chlorophyll d-containing phototrophs.

scientific article published on 16 December 2010

Enhanced biofuel production using optimality, pathway modification and waste minimization

article

Epiphyte grazing enhances productivity of remnant seagrass patches

article published in 2012

Estimating the potential for adaptation of corals to climate warming

scientific article

Evaluation of Reference Genes for RT-qPCR Studies in the Seagrass Zostera muelleri Exposed to Light Limitation

scientific article

Evidence of negative impacts of ecological tourism on turtlegrass (Thalassia testudinum) beds in a marine protected area of the Mexican Caribbean

article

Excess copper promotes photoinhibition and modulates the expression of antioxidant-related genes in Zostera muelleri

article

Exploring the Feasibility of Algae Building Technology in NSW

Fluorescence as a Tool to Understand Changes in Photosynthetic Electron Flow Regulation

scholarly article published 2010

Fresh carbon inputs to seagrass sediments induce variable microbial priming responses.

scientific article

Functional diversity of photobiological traits within the genus Symbiodinium appears to be governed by the interaction of cell size with cladal designation.

scientific article published on 28 May 2015

Gas Transfer Controls Carbon Limitation During Biomass Production by Marine Microalgae

scientific article

Gas and Liquid Chromatography-Mass Spectrometry-Based Metabolic Profiling of Marine Angiosperm Zostera muelleri (Alismatales, Zosteraceae)

Genome sequencing as a new window into the microbial community of membrane bioreactors - A critical review

scientific article published on 19 November 2019

Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network.

scientific article

Herbicide impact on Hormosira banksii gametes measured by fluorescence and germination bioassays

scientific article

Human Impacts on Seagrasses: Eutrophication, Sedimentation, and Contamination

article

Hybrid life-cycle assessment of algal biofuel production

scientific article

IMAGING OF OXYGEN DYNAMICS WITHIN THE ENDOLITHIC ALGAL COMMUNITY OF THE MASSIVE CORAL PORITES LOBATA(1).

scientific article published on June 2008

IMPACT OF BLEACHING STRESS ON THE FUNCTION OF THE OXYGEN EVOLVING COMPLEX OF ZOOXANTHELLAE FROM SCLERACTINIAN CORALS(1).

scientific article

Impact of Flue Gas Compounds on Microalgae and Mechanisms for Carbon Assimilation and Utilization - A Review.

scientific article

Impact of bleaching conditions on the components of non-photochemical quenching in the zooxanthellae of a coral

scientific article published in 2005

Impact of nitrogen availability upon the electron requirement for carbon fixation in Australian coastal phytoplankton communities

article

In situ impact of multiple pulses of metal and herbicide on the seagrass, Zostera capricorni.

scientific article published in April 2004

In situ impact of petrochemicals on the photosynthesis of the seagrass Zostera capricorni ⬇️

scientific article published on 01 November 2003

In situ net primary productivity and photosynthesis of Antarctic sea ice algal, phytoplankton and benthic algal communities

scholarly article by Andrew McMinn et al published 9 March 2010 in Marine Biology

In situ thermal dynamics of shallow water corals is affected by tidal patterns and irradiance

article

In vivo Microscale Measurements of Light and Photosynthesis during Coral Bleaching: Evidence for the Optical Feedback Loop?

scientific article

Increased rate of D1 repair in coral symbionts during bleaching is insufficient to counter accelerated photo-inactivation

Increased seawater temperature increases the abundance and alters the structure of natural Vibrio populations associated with the coral Pocillopora damicornis

scientific article

Inhibition of photosynthetic CO₂ fixation in the coral Pocillopora damicornis and its relationship to thermal bleaching

scientific article

Iron-limitation and high light stress on phytoplankton populations from the Australian Sub-Antarctic Zone (SAZ)

article

Laboratory testing protocol for the impact of dispersed petrochemicals on seagrass ⬇️

scientific article published on September 5, 2012

Lateral light transfer ensures efficient resource distribution in symbiont-bearing corals

scientific article

Light gradients and optical microniches in coral tissues

scientific article

Light respiratory processes and gross photosynthesis in two scleractinian corals

scientific article

Living at the margins - The response of deep-water seagrasses to light and temperature renders them susceptible to acute impacts

scientific article published on 12 February 2018

Loss of Functional Photosystem II Reaction Centres in Zooxanthellae of Corals Exposed to Bleaching Conditions: Using Fluorescence Rise Kinetics

scientific article published in 2004

Low oxygen affects photophysiology and the level of expression of two-carbon metabolism genes in the seagrass Zostera muelleri

scientific article

Mechanisms influencing the spread of a native marine alga ⬇️

scientific article

Melting out of sea ice causes greater photosynthetic stress in algae than freezing in1

scholarly article by Peter J Ralph et al published October 2007 in Journal of Phycology

Metabolomics: an emerging frontier of systems biology in marine macrophytes

Microalgal bioremediation of emerging contaminants - Opportunities and challenges

scientific article published on 27 July 2019

Microbial consortia increase thermal tolerance of corals

scientific article published in 2012

Microenvironment and phylogenetic diversity of Prochloron inhabiting the surface of crustose didemnid ascidians

scientific article

Modeling photoinhibition-driven bleaching in Scleractinian coral as a function of light, temperature, and heterotrophy

Molecular physiology reveals ammonium uptake and related gene expression in the seagrass Zostera muelleri

scientific article

Native species behaviour mitigates the impact of habitat-forming invasive seaweed

scientific article

Non-intrusive Assessment of Photosystem II and Photosystem I in Whole Coral Tissues

Nutrient uplift in a cyclonic eddy increases diversity, primary productivity and iron demand of microbial communities relative to a western boundary current

scientific article

Ocean acidification and warming alter photosynthesis and calcification of the symbiont-bearing foraminifera Marginopora vertebralis

article

Oxic microshield and local pH enhancement protects Zostera muelleri from sediment derived hydrogen sulphide

scientific article

PHOTOPHYSIOLOGICAL RESPONSES OF FRAGILARIOPSIS CYLINDRUS (BACILLARIOPHYCEAE) TO NITROGEN DEPLETION AT TWO TEMPERATURES(1).

scientific article

PHOTOPROTECTION OF SEA-ICE MICROALGAL COMMUNITIES FROM THE EAST ANTARCTIC PACK ICE(1).

scientific article

PSII activity and pigment dynamics of Symbiodinium in two Indo-Pacific corals exposed to short-term high-light stress

article

Paleoreconstruction of estuarine sediments reveal human-induced weakening of coastal carbon sinks

Partitioning of fungal assemblages across different marine habitats

scientific article

Phenotypic plasticity of southern ocean diatoms: key to success in the sea ice habitat?

scientific article

Photosynthesis and Metabolism in Seagrasses at the Cellular Level

scholarly article

Photosynthetic acclimation of Nannochloropsis oculata investigated by multi-wavelength chlorophyll fluorescence analysis.

scientific article

Photosynthetic response of Halophila ovalis (R. Br.) Hook. f. to combined environmental stress

article

Photosystem II Heterogeneity of in hospite Zooxanthellae in Scleractinian Corals Exposed to Bleaching Conditions

Physiological and morphological responses of the temperate seagrass Zostera muelleri to multiple stressors: investigating the interactive effects of light and temperature

scientific article

Phytosterol biosynthesis and production by diatoms (Bacillariophyceae)

scientific article published on 19 April 2019

PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers

scientific article

Polyamines in morphogenesis and development: a promising research area in seaweeds

scientific article

Potential for adaptation in response to thermal stress in an intertidal macroalga.

scientific article

Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures.

scientific article

Proteome Analysis Reveals Extensive Light Stress-Response Reprogramming in the Seagrass Zostera muelleri (Alismatales, Zosteraceae) Metabolism

scientific article

Proteomic and biophysical analyses reveal a metabolic shift in nitrogen deprived Nannochloropsis oculata

Quantifying and modelling the carbon sequestration capacity of seagrass meadows--a critical assessment.

scientific article

Radiative energy budget reveals high photosynthetic efficiency in symbiont-bearing corals

scientific article published on 29 January 2014

Rapid light curves: A powerful tool to assess photosynthetic activity

scholarly article by Peter J Ralph & Rolf Gademann published July 2005 in Aquatic Botany

Rapid photoprotection in sea-ice diatoms from the East Antarctic pack ice

article published in 2010

Reactive oxygen species (ROS) and dimethylated sulphur compounds in coral explants under acute thermal stress.

scientific article

Redefining the sponge-symbiont acquisition paradigm: sponge microbes exhibit chemotaxis towards host-derived compounds.

scientific article

Regional and Microenvironmental Scale Characterization of the Seagrass Microbiome

scientific article published on 14 May 2019

Remote-sensing reflectance and true colour produced by a coupled hydrodynamic, optical, sediment, biogeochemical model of the Great Barrier Reef, Australia: Comparison with satellite data

article

Review of fluorescent standards for calibration of in situ fluorometers: recommendations applied in coastal and ocean observing programs.

scientific article

Roadmaps and Detours: Active Chlorophyll- a Assessments of Primary Productivity Across Marine and Freshwater Systems

SHORT-TERM EFFECT OF TEMPERATURE ON THE PHOTOKINETICS OF MICROALGAE FROM THE SURFACE LAYERS OF ANTARCTIC PACK ICE1

article

SPATIAL HETEROGENEITY OF PHOTOSYNTHETIC ACTIVITY WITHIN DISEASED CORALS FROM THE GREAT BARRIER REEF

scholarly article by George Roff et al published April 2008 in Journal of Phycology

STATE TRANSITIONS AND NONPHOTOCHEMICAL QUENCHING DURING A NUTRIENT-INDUCED FLUORESCENCE TRANSIENT IN PHOSPHORUS-STARVEDDUNALIELLA TERTIOLECTA1

article

Seagrass rhizosphere microenvironment alters plant-associated microbial community composition

scientific article published on 24 April 2018

Seagrass-Mediated Phosphorus and Iron Solubilization in Tropical Sediments

scientific article published on 17 November 2017

SeagrassDB: An open-source transcriptomics landscape for phylogenetically profiled seagrasses and aquatic plants.

scientific article published on 9 February 2018

Seagrasses in an era of ocean warming: a review

scientific article published in 2021

Sediment Resuspension and Deposition on Seagrass Leaves Impedes Internal Plant Aeration and Promotes Phytotoxic H2S Intrusion

scientific article

Sediment and carbon deposition vary among vegetation assemblages in a coastal salt marsh

scholarly article by Jeffrey Kelleway et al published 17 August 2017 in Biogeosciences

Sediment anoxia limits microbial-driven seagrass carbon remineralization under warming conditions

scientific article

Sedimentary Factors are Key Predictors of Carbon Storage in SE Australian Saltmarshes

article

Seventy years of continuous encroachment substantially increases 'blue carbon' capacity as mangroves replace intertidal salt marshes

scientific article

Shade-induced response and recovery of the seagrass Posidonia sinuosa

article

Short-term response and recovery of Zostera capricorni photosynthesis after herbicide exposure

article

Snapshot prediction of carbon productivity, carbon and protein content in a Southern Ocean diatom using FTIR spectroscopy

scientific article

Southern Ocean phytoplankton physiology in a changing climate.

scientific article

Spectral effects on Symbiodinium photobiology studied with a programmable light engine

scientific article

Subtropical zooplankton assemblage promotes the harmful cyanobacterium Cylindrospermopsis raciborskii in a mesocosm experiment

Symbiodinium sp. cells produce light-induced intra- and extracellular singlet oxygen, which mediates photodamage of the photosynthetic apparatus and has the potential to interact with the animal host in coral symbiosis

scientific article

Temporal and spatial variation in the morphology of the brown macroalga Hormosira banksii (Fucales, Phaeophyta)

The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

scientific article published on 3 July 2016

The Role of Standing Variation in Geographic Convergent Adaptation

scientific article

The combined SPE:ToxY-PAM phytotoxicity assay; application and appraisal of a novel biomonitoring tool for the aquatic environment

scientific article published on 01 January 2005

The cyanobacterium Cylindrospermopsis raciborskii is facilitated by copepod selective grazing

The determination of activity of the enzyme Rubisco in cell extracts of the dinoflagellate alga Symbiodinium sp. by manganese chemiluminescence and its response to short-term thermal stress of the alga

scientific article published on 20 January 2010

The effect of Diel temperature and light cycles on the growth of nannochloropsis oculata in a photobioreactor matrix

scientific article

The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses.

scientific article published on 21 July 2016

The exposure of the Great Barrier Reef to ocean acidification.

scientific article

The impact of iron limitation on the physiology of the Antarctic diatom Chaetoceros simplex

scientific article

The in situ light microenvironment of corals

article by Daniel Wangpraseurt et al published May 2014 in Limnology and Oceanography

The interchangeability of autotrophic and heterotrophic nitrogen sources in Scleractinian coral symbiotic relationships: A numerical study

scientific article published in 2013

The site of regulation of light capture in Symbiodinium: does the peridinin-chlorophyll a-protein detach to regulate light capture?

scientific article

Thermal effects of tissue optics in symbiont-bearing reef-building corals

Thermal niche evolution of functional traits in a tropical marine phototroph

scientific article published on 13 August 2018

Towards a more ecologically relevant assessment of the impact of heavy metals on the photosynthesis of the seagrass, Zostera capricorni

scientific article published on 01 January 2002

Toxicity of uranium and copper individually, and in combination, to a tropical freshwater macrophyte (Lemna aequinoctialis).

scientific article

Transcriptome profiling analysis of the seagrass, Zostera muelleri under copper stress

scientific article published on 26 September 2019

Transcriptomic investigation into polyketide toxin synthesis in Ostreopsis (Dinophyceae) species

scientific article published on 30 August 2019

Trophic cul-de-sac,Pyrazus ebeninus,limits trophic transfer through an estuarine detritus-based food web

scientific article published in 2007

Unassembled cell wall proteins form aggregates in the extracellular space of Chlamydomonas reinhardtii strain UVM4

scientific article published on 23 May 2022

Under high light stress two Indo-Pacific coral species display differential photodamage and photorepair dynamics

scientific article published in 2016

Utility of Photochemical Traits as Diagnostics of Thermal Tolerance amongst Great Barrier Reef Corals

VARIABILITY IN THE PRIMARY SITE OF PHOTOSYNTHETIC DAMAGE IN SYMBIODINIUM SP. (DINOPHYCEAE) EXPOSED TO THERMAL STRESS(1).

scientific article

Variability in microbial community composition and function between different niches within a coral reef

scientific article

Variations in sensitivity to copper and zinc among three isolated populations of the seagrass, Zostera capricorni

scientific article published in April 2004

Warmer more acidic conditions cause decreased productivity and calcification in subtropical coral reef sediment-dwelling calcifiers

article

isomiRs: Increasing Evidences of isomiRs Complexity in Plant Stress Functional Biology

scientific article

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