Search filters

List of works by Markus Müller

A combined CXCL10, CXCL8 and H-FABP panel for the staging of human African trypanosomiasis patients

scientific article

A simple workflow to increase MS2 identification rate by subsequent spectral library search

scientific article

An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates

scientific article

An integrated mass spectrometric and computational framework for the analysis of protein interaction networks

scientific article published on 25 February 2007

Analysis of Proteomes Using the Molecular Scanner

scientific article published on 01 February 2007

Automated protein identification by tandem mass spectrometry: issues and strategies

scientific article

Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels into in vitro diagnostics?

scientific article published on December 2009

Chemical Genetics of AGC-kinases Reveals Shared Targets of Ypk1, Protein Kinase A and Sch9

scientific article published on 26 February 2020

Clustering and filtering tandem mass spectra acquired in data-independent mode.

scientific article

EasyProt--an easy-to-use graphical platform for proteomics data analysis

scientific article

Glycation isotopic labeling with 13C-reducing sugars for quantitative analysis of glycated proteins in human plasma

scientific article

Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides

scientific article published in 2024

In silico analysis of accurate proteomics, complemented by selective isolation of peptides

article

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes

scientific article published on 10 March 2020

Isoelectric point optimization using peptide descriptors and support vector machines.

scientific article

LC/MS data processing for label-free quantitative analysis.

scientific article

Machine learning approaches to lung cancer prediction from mass spectra.

scientific article published in September 2003

Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands

scientific article published on 17 December 2019

MzJava: An open source library for mass spectrometry data processing

scientific article

Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective

scientific article (publication date: 2014)

Processing and classification of protein mass spectra

scientific article

Processing strategies and software solutions for data-independent acquisition in mass spectrometry

scientific article

Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation

scientific article

QuickMod: A tool for open modification spectrum library searches

scientific article

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

scientific article published on October 2007

The molecular scanner: concept and developments

scientific article published in February 2004

Unrestricted identification of modified proteins using MS/MS.

scientific article published on February 2010

Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding.

scientific article published on 3 May 2015

Wnt-controlled sphingolipids modulate Anthrax Toxin Receptor palmitoylation to regulate oriented mitosis in zebrafish

scientific article published on 03 July 2020

pROC: an open-source package for R and S+ to analyze and compare ROC curves

scientific article (publication date: 17 March 2011)

Paulina is supported by:

About Paulina

Help