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List of works by David G. Pisano

ARF triggers senescence in Brca2-deficient cells by altering the spectrum of p53 transcriptional targets

scientific article published on January 2013

ARID1A alterations are associated with FGFR3-wild type, poor-prognosis, urothelial bladder tumors.

scientific article

ASXL1, TP53 and IKZF3 mutations are present in the chronic phase and blast crisis of chronic myeloid leukemia.

scientific article published on 8 November 2013

Assessment of copy number variation using the Illumina Infinium 1M SNP-array: a comparison of methodological approaches in the Spanish Bladder Cancer/EPICURO study

scientific article published on 25 January 2011

CARGO: a web portal to integrate customized biological information

scientific article published on 5 May 2007

Cdc14b regulates mammalian RNA polymerase II and represses cell cycle transcription

scientific article published on 12 December 2011

Combinatorial effects of microRNAs to suppress the Myc oncogenic pathway

scientific article

De novo assembly and functional annotation of the olive (Olea europaea) transcriptome

scientific article

Deep sequencing reveals microRNAs predictive of antiangiogenic drug response

scientific article published on 07 July 2016

Differential gene expression of medullary thyroid carcinoma reveals specific markers associated with genetic conditions

scientific article

Distinct DNA methylomes of newborns and centenarians

scientific article

Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia.

scientific article published on 14 October 2012

Epstein-Barr virus microRNAs repress BCL6 expression in diffuse large B-cell lymphoma.

scientific article published on 26 July 2011

Erratum to: The UBC-40 Urothelial Bladder Cancer Cell Line Index: a genomic resource for functional studies.

scientific article published on 30 November 2015

Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia

scientific article

Exome sequencing reveals novel and recurrent mutations with clinical impact in blastic plasmacytoid dendritic cell neoplasm

scientific article published on 27 September 2013

Expression and functional validation of new p38α transcriptional targets in tumorigenesis

scientific article published on 01 March 2011

Functional signatures identified in B-cell non-Hodgkin lymphoma profiles.

scientific article published on October 2009

Genetic inactivation of Cdk7 leads to cell cycle arrest and induces premature aging due to adult stem cell exhaustion

scientific article

Genome-wide analysis of Pax8 binding provides new insights into thyroid functions

scientific article

Genome-wide analysis of in vivo TRF1 binding to chromatin restricts its location exclusively to telomeric repeats

scientific article

INK4a/ARF limits the expansion of cells suffering from replication stress

scientific article published on 15 May 2013

Identification of TERRA locus unveils a telomere protection role through association to nearly all chromosomes

scientific article

Inhibition of de novo NAD(+) synthesis by oncogenic URI causes liver tumorigenesis through DNA damage

scientific article

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

scientific article

Long-range epigenetic silencing associates with deregulation of Ikaros targets in colorectal cancer cells

scientific article published on 7 July 2011

Mantle cell lymphoma: transcriptional regulation by microRNAs

scientific article published on 20 May 2010

Massive parallel DNA pyrosequencing analysis of the tumor suppressor BRG1/SMARCA4 in lung primary tumors

scientific article published on 7 December 2010

MicroRNA expression signatures for the prediction of BRCA1/2 mutation-associated hereditary breast cancer in paraffin-embedded formalin-fixed breast tumors

scientific article published on 19 June 2014

MicroRNA signatures in B-cell lymphomas.

scientific article published on 17 February 2012

New mutations in chronic lymphocytic leukemia identified by target enrichment and deep sequencing ⬇️

scientific article

Non-coding recurrent mutations in chronic lymphocytic leukaemia

scientific article published in Nature

PLCG1 mutations in cutaneous T-cell lymphomas

scientific article published on 4 February 2014

PathJam: a new service for integrating biological pathway information

scientific article published on 28 October 2010

PileLine: a toolbox to handle genome position information in next-generation sequencing studies ⬇️

scientific article published on January 24, 2011

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies ⬇️

scientific article published on June 6, 2011

Profiling of Sox4-dependent transcriptome in skin links tumour suppression and adult stem cell activation

scientific article

RAB7 controls melanoma progression by exploiting a lineage-specific wiring of the endolysosomal pathway

scientific article

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses

scientific article published on 28 April 2013

Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy.

scientific article published on 13 October 2013

Research resource: Transcriptional profiling reveals different pseudohypoxic signatures in SDHB and VHL-related pheochromocytomas

scientific article

Select your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs

scientific article published in January 2012

Sox4 links tumor suppression to accelerated aging in mice by modulating stem cell activation

scientific article

TCL1A expression delineates biological and clinical variability in B-cell lymphoma

scientific article published on 26 September 2008

Telomerase expression confers cardioprotection in the adult mouse heart after acute myocardial infarction

scientific article published on 18 December 2014

The EMBRACE web service collection

scientific article (publication date: July 2010)

The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies

scientific article published on 22 May 2015

The contribution of cohesin-SA1 to gene expression and chromatin architecture in two murine tissues

scientific article

The dynamic DNA methylomes of double-stranded DNA viruses associated with human cancer

scientific article published on 10 February 2009

The specific contributions of cohesin-SA1 to cohesion and gene expression: implications for cancer and development

scientific article published on 15 June 2012

The tumour suppressor and chromatin-remodelling factor BRG1 antagonizes Myc activity and promotes cell differentiation in human cancer

scientific article

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

scientific article

UNG shapes the specificity of AID-induced somatic hypermutation.

scientific article

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis

scientific article published on 30 April 2009

Whole genome analysis of p38 SAPK-mediated gene expression upon stress.

scientific article

iMSRC: converting a standard automated microscope into an intelligent screening platform

scientific article published on 27 May 2015

miR-181b negatively regulates activation-induced cytidine deaminase in B cells

scientific journal article

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets

scientific article

miRNA expression in diffuse large B-cell lymphoma treated with chemoimmunotherapy

scientific article published in June 2011

miRNA expression profiling of formalin-fixed paraffin-embedded (FFPE) hereditary breast tumors

scientific article

waviCGH: a web application for the analysis and visualization of genomic copy number alterations

scientific article

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