List of works - Naofumi Handa

A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex.

scientific article

A Molecular Throttle

scientific article (publication date: September 2003)

A novel, 11 nucleotide variant of chi, chi*: one of a class of sequences defining the Escherichia coli recombination hotspot chi.

scientific article published on July 2000

Accumulation of large non-circular forms of the chromosome in recombination-defective mutants of Escherichia coli ⬇️

scientific article published on April 28, 2003

Alteration of χ recognition by RecBCD reveals a regulated molecular latch and suggests a channel-bypass mechanism for biological control

scientific article

Birth and death of genes linked to chromosomal inversion.

scientific article

Chi-star, a chi-related 11-mer sequence partially active in an E. coli recC1004 strain.

scientific article published in August 1997

Cleavage of a model DNA replication fork by a Type I restriction endonuclease.

scientific article

Cleavage of a model DNA replication fork by a methyl-specific endonuclease.

scientific article published on 26 March 2011

Clustering of chi sequence in Escherichia coli genome.

scientific article

Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex.

scientific article published on 23 April 2009

Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex

scientific article published on 01 May 2001

Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species

scientific article

MCM8-9 complex promotes resection of double-strand break ends by MRE11-RAD50-NBS1 complex

scientific article

Molecular determinants responsible for recognition of the single-stranded DNA regulatory sequence, χ, by RecBCD enzyme

scientific article

Multiplication of a restriction-modification gene complex.

scientific article

PHF11 promotes DSB resection, ATR signaling, and HR.

scientific article

Reconstitution of initial steps of dsDNA break repair by the RecF pathway of E. coli

scientific article

Restriction-modification systems as genomic parasites in competition for specific sequences

scientific article

Sae2 promotes DNA damage resistance by removing the Mre11-Rad50-Xrs2 complex from DNA and attenuating Rad53 signaling

scientific article

Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions

scientific article published on 05 May 2009

The AddAB helicase/nuclease forms a stable complex with its cognate chi sequence during translocation.

scientific article published on 21 April 2006

The third exon of the budding yeast meiotic recombination gene HOP2 is required for calcium-dependent and recombinase Dmc1-specific stimulation of homologous strand assimilation.

scientific article

List of works by Naofumi Handa

A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex.

A Molecular Throttle

A novel, 11 nucleotide variant of chi, chi*: one of a class of sequences defining the Escherichia coli recombination hotspot chi.

Accumulation of large non-circular forms of the chromosome in recombination-defective mutants of Escherichia coli ⬇️

Alteration of χ recognition by RecBCD reveals a regulated molecular latch and suggests a channel-bypass mechanism for biological control

Birth and death of genes linked to chromosomal inversion.

Chi-star, a chi-related 11-mer sequence partially active in an E. coli recC1004 strain.

Cleavage of a model DNA replication fork by a Type I restriction endonuclease.

Cleavage of a model DNA replication fork by a methyl-specific endonuclease.

Clustering of chi sequence in Escherichia coli genome.

Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex.

Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex

Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species

MCM8-9 complex promotes resection of double-strand break ends by MRE11-RAD50-NBS1 complex

Molecular determinants responsible for recognition of the single-stranded DNA regulatory sequence, χ, by RecBCD enzyme

Multiplication of a restriction-modification gene complex.

PHF11 promotes DSB resection, ATR signaling, and HR.

Reconstitution of initial steps of dsDNA break repair by the RecF pathway of E. coli

Restriction-modification systems as genomic parasites in competition for specific sequences

Sae2 promotes DNA damage resistance by removing the Mre11-Rad50-Xrs2 complex from DNA and attenuating Rad53 signaling

Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions

The AddAB helicase/nuclease forms a stable complex with its cognate chi sequence during translocation.

The third exon of the budding yeast meiotic recombination gene HOP2 is required for calcium-dependent and recombinase Dmc1-specific stimulation of homologous strand assimilation.