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List of works by Ellis Patrick

A Wnt-mediated phenotype switch along the epithelial-mesenchymal axis defines resistance and invasion downstream of ionising radiation in oral squamous cell carcinoma

scientific article published on 30 March 2021

A molecular network of the aging human brain provides insights into the pathology and cognitive decline of Alzheimer’s disease

article

A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types

scientific article

A transcriptomic atlas of aged human microglia.

scientific article published on 7 February 2018

An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome

scientific article published on 4 September 2017

Blood CRP levels are elevated in children and adolescents with functional neurological symptom disorder

scientific article published on 24 August 2018

Characterization of the human myelin oligodendrocyte glycoprotein antibody response in demyelination

scientific article published on 03 September 2019

DCARS: differential correlation across ranked samples

scientific article published on 01 March 2019

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression

scientific article published on 17 August 2020

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway

scientific article

Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer's disease.

scientific article

Evaluating stably expressed genes in single cells

scientific article published on 01 September 2019

Hepatic metallothionein expression in chronic hepatitis C virus infection is IFNL3 genotype-dependent.

scientific article published on 16 January 2014

Identification of HIV transmitting CD11c+ human epidermal dendritic cells

scientific article published on 21 June 2019

Impaired Akt phosphorylation in insulin-resistant human muscle is accompanied by selective and heterogeneous downstream defects.

scientific article

Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information.

scientific article

Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data

scientific article

Investigating higher-order interactions in single-cell data with scHOT

scientific article published on 13 July 2020

KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis.

scientific article

MicroRNA and mRNA expression profiling in metastatic melanoma reveal associations with BRAF mutation and patient prognosis.

scientific article published on 5 January 2015

Phonological Encoding in Mandarin Chinese: Evidence from Tongue Twisters

scientific article published on 01 December 2015

Polygenic analysis of inflammatory disease variants and effects on microglia in the aging brain

scientific article published on 24 July 2018

Reproductive period and epigenetic modifications of the oxidative phosphorylation pathway in the human prefrontal cortex ⬇️

scientific article published on 27 July 2018

Standardisation of flow cytometry for whole blood immunophenotyping of islet transplant and transplant clinical trial recipients.

scientific article published on 22 May 2019

Taking Kidneys for Granted? Time to Reflect on the Choices We Make.

scientific article published on 21 June 2017

The acute phase protein lactoferrin is a key feature of Alzheimer's disease and predictor of Aβ burden through induction of APP amyloidogenic processing

scientific article published on 16 August 2021

Transcriptomic Analysis Identifies A Tolerogenic Dendritic Cell Signature

scientific article published on 20 October 2021

Using Transcriptomic Hidden Variables to Infer Context-Specific Genotype Effects in the Brain

scientific article published on 22 August 2019

scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction

scientific article published in 2022

spicyR: spatial analysis of <i>in situ</i> cytometry data in R

scientific article published in 2022

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