List of works by Inge Jonassen

A fast top-down method for constructing reliable radiation hybrid frameworks

scientific article published in January 2002

A graph based algorithm for generating EST consensus sequences

scientific article

A structural pattern-based method for protein fold recognition.

scientific article

Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role

scientific article published on 30 September 2008

Analysis of gene-expression data using J-Express

scientific article

Angiogenesis-independent tumor growth mediated by stem-like cancer cells

scholarly article

Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences

scientific article published in January 2002

BioXSD: the common data-exchange format for everyday bioinformatics web services

scientific article

CD34 expression in native human acute myelogenous leukemia blasts: Differences in CD34 membrane molecule expression are associated with different gene expression profiles

article

CREST--classification resources for environmental sequence tags

scientific article

Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim

scientific article

Characteristics of 454 pyrosequencing data—enabling realistic simulation with flowsim.

scientific article published on 14 July 2011

Characterization of Early Stages of Human B Cell Development by Gene Expression Profiling

scientific article published on 01 September 2007

Characterization of the 18S rRNA gene for designing universal eukaryote specific primers.

scientific article

Comparison of nucleic acid targets prepared from total RNA or poly(A) RNA for DNA oligonucleotide microarray hybridization

scientific article published on 18 March 2007

Correction: Modulation of Transcriptional and Inflammatory Responses in Murine Macrophages by the Mycobacterium tuberculosis Mammalian Cell Entry (Mce) 1 Complex

scientific article published on 7 November 2011

Deblender: a semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples

scientific article published on 7 November 2018

Discovering patterns conserved in sets of unaligned protein sequences.

scientific article published in January 2000

Discovery of local packing motifs in protein structures.

scientific article published in February 1999

Distributed and interactive visual analysis of omics data

scientific article

Dynamic domain threading.

scientific article published in August 2006

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

scientific article

Efficient discovery of conserved patterns using a pattern graph.

scientific article

Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods

scientific article

Exome sequencing and genetic testing for MODY.

scientific article

Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA.

scientific article

Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold

scientific article

Fast sequence clustering using a suffix array algorithm

scientific article published in July 2003

Filtering duplicate reads from 454 pyrosequencing data

scientific article

Finding flexible patterns in unaligned protein sequences

scientific article

Functional involvement of RINF, retinoid-inducible nuclear factor (CXXC5), in normal and tumoral human myelopoiesis

scientific article

Gene expression patterns related to vascular invasion and aggressive features in endometrial cancer

scientific article

Gene expression profiles in prostate cancer: association with patient subgroups and tumour differentiation.

scientific article

Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation

scientific article

Gene expression profiles of head and neck carcinomas from Sudanese and Norwegian patients reveal common biological pathways regardless of race and lifestyle

scientific article published in February 2006

Gene expression profiling of minor salivary glands clearly distinguishes primary Sjögren's syndrome patients from healthy control subjects.

scientific article

Gene set based integrated data analysis reveals phenotypic differences in a brain cancer model

scientific article

Genes of cell-cell interactions, chemotherapy detoxification and apoptosis are induced during chemotherapy of acute myeloid leukemia

scientific article

Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis ⬇️

scientific article

Genomic diversity among Beijing and non-Beijing Mycobacterium tuberculosis isolates from Myanmar

scientific article

Global gene expression in classification, pathogenetic understanding and identification of therapeutic targets in acute myeloid leukemia

scientific article published on December 2007

High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example

scientific article

High-throughput metabarcoding of eukaryotic diversity for environmental monitoring of offshore oil-drilling activities

scientific article published on 25 July 2016

Increased expression of SIM2-s protein is a novel marker of aggressive prostate cancer

scientific article published in February 2007

Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation

scholarly article

InterPro--an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: December 2000)

LSimpute: accurate estimation of missing values in microarray data with least squares methods

scientific article

Linkage-disequilibrium-based binning affects the interpretation of GWASs

scientific article published on 22 March 2012

Masking repeats while clustering ESTs

scientific article

Modulation of transcriptional and inflammatory responses in murine macrophages by the Mycobacterium tuberculosis mammalian cell entry (Mce) 1 complex

scientific article

Mycobacterium tuberculosis Mce1 protein complex initiates rapid induction of transcription of genes involved in substrate trafficking

scientific article

New feature subset selection procedures for classification of expression profiles

scientific article

Norwegian e-Infrastructure for Life Sciences (NeLS)

Novel SLC19A3 Promoter Deletion and Allelic Silencing in Biotin-Thiamine-Responsive Basal Ganglia Encephalopathy

scientific article

Pattern discovery in biosequences

Predicting gene regulatory elements in silico on a genomic scale

scientific article

Prediction of protein structure from ideal forms.

scientific article

Probing the "dark matter" of protein fold space.

scientific article

Protein model refinement using structural fragment tessellation.

scientific article published on 18 September 2006

RASflow: an RNA-Seq analysis workflow with Snakemake

scientific article published on 18 March 2020

RBR: library-less repeat detection for ESTs

scientific article

RareVariantVis: new tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data

scientific article

Repeats and EST analysis for new organisms

scientific article

Salmon louse (Lepeophtheirus salmonis) transcriptomes during post molting maturation and egg production, revealed using EST-sequencing and microarray analysis

scientific article

Searching the protein structure databank with weak sequence patterns and structural constraints.

scientific article

Sequencing the genome of the Atlantic salmon (Salmo salar).

scientific article

Specific cellular signal-transduction responses to in vivo combination therapy with ATRA, valproic acid and theophylline in acute myeloid leukemia

scientific article published on 11 February 2011

Structural fragments in protein model refinement.

scientific article published in January 2008

Structure comparison and structure patterns

scientific article

Structure motif discovery and mining the PDB.

scientific article published in February 2002

Structure-dependent relationships between growth temperature of prokaryotes and the amino acid frequency in their proteins

scientific article published on 12 April 2007

Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes

scientific article (publication date: 2013)

Systematic exploration of error sources in pyrosequencing flowgram data ⬇️

scientific article

TMM@: a web application for the analysis of transmembrane helix mobility

scientific article

The Atlantic salmon genome provides insights into rediploidization

scientific article

The BREW workshop series: a stimulating experience in PhD education

scientific article published on 23 January 2008

The ELIXIR channel in F1000Research

scientific article

The EMBRACE web service collection

scientific article (publication date: July 2010)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: 2001)

The Mechanism of Protraction of Insulin Detemir, a Long-Acting, Acylated Analog of Human Insulin

scientific article published on 01 August 2004

The genome sequence of Atlantic cod reveals a unique immune system

scientific article published on 10 August 2011

Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data

scientific article

Tumor necrosis is an important hallmark of aggressive endometrial cancer and associates with hypoxia, angiogenesis and inflammation responses

scientific article published on 14 October 2015

Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity

scientific article

XHM: a system for detection of potential cross hybridizations in DNA microarrays

scientific article

cDNA microarray analysis of non-selected cases of acute myeloid leukemia demonstrates distinct clustering independent of cytogenetic aberrations and consistent with morphological signs of differentiation

scientific article published on 01 May 2006

Paulina is supported by:

About Paulina

Help