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List of works by Alexander Bockmayr

A mixed-integer linear programming approach to the reduction of genome-scale metabolic networks

scientific article

A model-based method for investigating bioenergetic processes in autotrophically growing eukaryotic microalgae: application to the green algae Chlamydomonas reinhardtii

scientific article published on 12 May 2011

A multi-scale constraint programming model of alternative splicing regulation

Analysis and characterization of asynchronous state transition graphs using extremal states

scientific article published on 19 October 2012

Analysis of metabolic subnetworks by flux cone projection.

scientific article published on 29 May 2012

Cellular trade-offs and optimal resource allocation during cyanobacterial diurnal growth.

scientific article

Computing Elementary Flux Modes Involving a Set of Target Reactions

scientific article published in November 2014

Direct phasing by binary integer programming

scientific article published on 18 April 2002

Double and multiple knockout simulations for genome-scale metabolic network reconstructions

scientific article published on 9 January 2015

Dynamic optimization of metabolic networks coupled with gene expression

scientific article

Elucidating temporal resource allocation and diurnal dynamics in phototrophic metabolism using conditional FBA.

scientific article published on 26 October 2015

Exploring metabolic pathways in genome-scale networks via generating flux modes

scientific article published in 2010

F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks ⬇️

scientific article published on April 23, 2012

FFCA: a feasibility-based method for flux coupling analysis of metabolic networks ⬇️

scientific article published on June 15, 2011

Fast thermodynamically constrained flux variability analysis.

scientific article published on 6 February 2013

Finding MEMo: minimum sets of elementary flux modes

scientific article published on 06 August 2019

Flux coupling analysis of metabolic networks is sensitive to missing reactions ⬇️

scientific article published on October 1, 2010

Flux modules in metabolic networks

scientific article published on 19 October 2013

Generic flux coupling analysis

scientific article published on 22 January 2015

Multiscale Modeling of Alternative Splicing Regulation

Network reduction in metabolic pathway analysis: elucidation of the key pathways involved in the photoautotrophic growth of the green alga Chlamydomonas reinhardtii

scientific article published on 10 February 2012

On flux coupling analysis of metabolic subsystems

scientific article published on 3 March 2012

Preservation of dynamic properties in qualitative modeling frameworks for gene regulatory networks.

scientific article published on 14 March 2013

Sequential metabolic phases as a means to optimize cellular output in a constant environment

scientific article

Time series dependent analysis of unparametrized Thomas networks.

scientific article

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