List of works - Lutz Krause

A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area

scientific article published in Scientific Reports

Author Correction: A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area

scientific article published on 07 June 2019

Author Correction: Increased susceptibility of airway epithelial cells from ataxia-telangiectasia to S. pneumoniae infection due to oxidative damage and impaired innate immunity

scientific article published on 24 July 2020

BRAF mutation status is an independent prognostic factor for resected stage IIIB and IIIC melanoma: implications for melanoma staging and adjuvant therapy.

scientific article published on 25 July 2014

BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser

scientific article

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology

scientific article

Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions

scientific article

Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease

scientific article

Chromosome arm aneuploidies shape tumour evolution and drug response

scientific article published on 23 January 2020

Chronic High-Fat Diet Induces Early Barrett's Esophagus in Mice through Lipidome Remodeling

scientific article published on 16 May 2020

Colonization-induced host-gut microbial metabolic interaction

scientific article

Common variants in the CYP2C19 gene are associated with susceptibility to endometriosis

scientific article

Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing

scientific article

Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.

scientific article

Complete genome sequence of the myxobacterium Sorangium cellulosum

scientific article

Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to 3 year old Australian children

scientific article

EMMA: a platform for consistent storage and efficient analysis of microarray data

scientific article

Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects

scientific article published on 18 September 2015

Finding novel genes in bacterial communities isolated from the environment

article

GISMO--gene identification using a support vector machine for ORF classification

scientific article published on 14 December 2006

Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant.

scientific article published on 8 April 2008

Genome-wide analysis of esophageal adenocarcinoma yields specific copy number aberrations that correlate with prognosis

scientific article published on 21 January 2014

Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis.

scientific article

Germline copy number variants are not associated with globally acquired copy number changes in familial breast tumours

scientific article

Helminths, polyparasitism, and the gut microbiome in the Philippines

scientific article published on 03 March 2020

High fat diet drives obesity regardless the composition of gut microbiota in mice

scientific article

Hypermethylation in the ZBTB20 gene is associated with major depressive disorder

scientific article

Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma

scientific article published on 10 February 2016

Immune Signature Against Plasmodium falciparum Antigens Predicts Clinical Immunity in Distinct Malaria Endemic Communities

scientific article published on 28 October 2019

Impact of dietary dairy polar lipids on lipid metabolism of mice fed a high-fat diet

scientific article

Impact of experimental hookworm infection on the human gut microbiota

scientific article

Increased susceptibility of airway epithelial cells from ataxia-telangiectasia to S. pneumoniae infection due to oxidative damage and impaired innate immunity

scientific article published on 22 February 2019

Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome.

scientific article

Influence of fasting during moult on the faecal microbiota of penguins

scientific article

Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology

article

Interspecific variations in the faecal microbiota of Procellariiform seabirds.

scientific article

Long-term Health-related Quality of Life Following Esophagectomy: A Nonrandomized Comparison of Thoracoscopically Assisted and Open Surgery

scientific article published on 15 July 2016

Male-specific Association Between Fat-Free Mass Index and Fecal Microbiota in 2- to 3-Year-Old Australian Children

scientific article published on 17 October 2017

Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok.

scientific article published on 16 March 2018

Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer

scientific article

Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer.

scientific article

Microbial ecology of four coral atolls in the Northern Line Islands.

scientific article

Molecular investigation of bacterial communities on intravascular catheters: no longer just Staphylococcus

scientific article

Monozygotic twins affected with major depressive disorder have greater variance in methylation than their unaffected co-twin

scientific article published on 11 June 2013

Neonatal environment exerts a sustained influence on the development of the intestinal microbiota and metabolic phenotype

scientific article published on 12 June 2015

Nutrigenomics: where are we with genetic and epigenetic markers for disposition and susceptibility? ⬇️

scientific article published on November 1, 2010

Obesity-induced sperm DNA methylation changes at satellite repeats are reprogrammed in rat offspring.

scientific article

Oral T4-like phage cocktail application to healthy adult volunteers from Bangladesh.

scientific article published on 24 October 2012

Patterns of inter-individual variability in the antibody repertoire targeting proteins across the Epstein-Barr virus proteome.

scientific article

Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing

scientific article

Phylogenetic classification of short environmental DNA fragments

scientific article (publication date: April 2008)

Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics.

scientific article

REGANOR

scientific article published on 01 January 2006

Safety analysis of a Russian phage cocktail: From MetaGenomic analysis to oral application in healthy human subjects ⬇️

scientific article published on June 10, 2013

Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine model

scientific article

Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation

scientific article published on 02 July 2013

Suppression of inflammation by helminths: a role for the gut microbiota?

scientific article

TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach

scientific article

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

scientific article published on 17 April 2015

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis

scientific article

The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity

scientific article (publication date: March 2008)

The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology

scientific article published on 27 May 2008

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

scientific article

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

scientific article published on 23 January 2019

Whole-genome sequence of the oriental lung fluke Paragonimus westermani

Whole-genome sequencing of human malignant mesothelioma tumours and cell lines

scientific article published on 01 July 2019

List of works by Lutz Krause

A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area

Author Correction: A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area

Author Correction: Increased susceptibility of airway epithelial cells from ataxia-telangiectasia to S. pneumoniae infection due to oxidative damage and impaired innate immunity

BRAF mutation status is an independent prognostic factor for resected stage IIIB and IIIC melanoma: implications for melanoma staging and adjuvant therapy.

BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology

Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions

Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease

Chromosome arm aneuploidies shape tumour evolution and drug response

Chronic High-Fat Diet Induces Early Barrett's Esophagus in Mice through Lipidome Remodeling

Colonization-induced host-gut microbial metabolic interaction

Common variants in the CYP2C19 gene are associated with susceptibility to endometriosis

Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing

Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.

Complete genome sequence of the myxobacterium Sorangium cellulosum

Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to 3 year old Australian children

EMMA: a platform for consistent storage and efficient analysis of microarray data

Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects

Finding novel genes in bacterial communities isolated from the environment

GISMO--gene identification using a support vector machine for ORF classification

Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant.

Genome-wide analysis of esophageal adenocarcinoma yields specific copy number aberrations that correlate with prognosis

Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis.

Germline copy number variants are not associated with globally acquired copy number changes in familial breast tumours

Helminths, polyparasitism, and the gut microbiome in the Philippines

High fat diet drives obesity regardless the composition of gut microbiota in mice

Hypermethylation in the ZBTB20 gene is associated with major depressive disorder

Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma

Immune Signature Against Plasmodium falciparum Antigens Predicts Clinical Immunity in Distinct Malaria Endemic Communities

Impact of dietary dairy polar lipids on lipid metabolism of mice fed a high-fat diet

Impact of experimental hookworm infection on the human gut microbiota

Increased susceptibility of airway epithelial cells from ataxia-telangiectasia to S. pneumoniae infection due to oxidative damage and impaired innate immunity

Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome.

Influence of fasting during moult on the faecal microbiota of penguins

Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology

Interspecific variations in the faecal microbiota of Procellariiform seabirds.

Long-term Health-related Quality of Life Following Esophagectomy: A Nonrandomized Comparison of Thoracoscopically Assisted and Open Surgery

Male-specific Association Between Fat-Free Mass Index and Fecal Microbiota in 2- to 3-Year-Old Australian Children

Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok.

Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer

Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer.

Microbial ecology of four coral atolls in the Northern Line Islands.

Molecular investigation of bacterial communities on intravascular catheters: no longer just Staphylococcus

Monozygotic twins affected with major depressive disorder have greater variance in methylation than their unaffected co-twin

Neonatal environment exerts a sustained influence on the development of the intestinal microbiota and metabolic phenotype

Nutrigenomics: where are we with genetic and epigenetic markers for disposition and susceptibility? ⬇️

Obesity-induced sperm DNA methylation changes at satellite repeats are reprogrammed in rat offspring.

Oral T4-like phage cocktail application to healthy adult volunteers from Bangladesh.

Patterns of inter-individual variability in the antibody repertoire targeting proteins across the Epstein-Barr virus proteome.

Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing

Phylogenetic classification of short environmental DNA fragments

Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics.

REGANOR

Safety analysis of a Russian phage cocktail: From MetaGenomic analysis to oral application in healthy human subjects ⬇️

Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine model

Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation

Suppression of inflammation by helminths: a role for the gut microbiota?

TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis

The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity

The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

Whole-genome sequence of the oriental lung fluke Paragonimus westermani

Whole-genome sequencing of human malignant mesothelioma tumours and cell lines