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List of works by Michael R. Crusoe

BioHackEU24 report: Creating user benefit from ARC-ISA RO-Crate machine-actionability & Increasing FAIRness of digital agrosystem resources by extending Bioschemas

Channeling Community Contributions to Scientific Software: A Sprint Experience

scientific article

Common Workflow Language

open standards project

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards.

scientific article published on 19 January 2018

DBCLS BioHackathon 2024 report: Everything about workflow and container

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

scientific article published on 29 November 2018

Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

scientific article published on 31 December 2018

FAIR Computational Workflows

Implementation of FAIR Practices in Computational Metabolomics Workflows—A Case Study

scientific article published on 10 February 2024

MGnify: the microbiome analysis resource in 2020

scientific article published on 01 January 2020

Methods included: Standardizing computational reuse and portability with the Common Workflow Language

scientific article published in June 2022

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience

scholarly article published 18 April 2018

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience ⬇️

scientific article published on 18 April 2018

Perspectives on automated composition of workflows in the life sciences

scientific article

RO-Crate Metadata Specification 1.1.1

academic document

Recommendations for the packaging and containerizing of bioinformatics software

Recommendations for the packaging and containerizing of bioinformatics software

scientific article published on 14 June 2018

Recording provenance of workflow runs with RO-Crate

scientific article published on 10 September 2024

Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis

Scalable Workflows and Reproducible Data Analysis for Genomics

scientific article published on 01 January 2019

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

scientific article published on 01 November 2019

Supercomputing with MPI meets the Common Workflow Language standards: an experience report

The khmer software package: enabling efficient nucleotide sequence analysis

scientific article published on 25 September 2015

Using bio.tools to generate and annotate workbench tool descriptions.

scientific article published on 30 November 2017

Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab

scientific article

khmer release v2.1: software for biological sequence analysis

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