List of works - Carlos G Schrago

Analysis of adaptive evolution in Lyssavirus genomes reveals pervasive diversifying selection during species diversification

scientific article

Appropriate Assignment of Fossil Calibration Information Minimizes the Difference between Phylogenetic and Pedigree Mutation Rates in Humans

scientific article published on 22 October 2018

Arrival and diversification of mabuyine skinks (Squamata: Scincidae) in the Neotropics based on a fossil-calibrated timetree

scientific article

Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time Estimates

scientific article (publication date: 2014)

Boronated tartrolon antibiotic produced by symbiotic cellulose-degrading bacteria in shipworm gills

scientific article published on 3 January 2013

Characterization and comparative analysis of a simian foamy virus complete genome isolated from Brazilian capuchin monkeys

scientific article published on 3 June 2015

Characterization of Juquitiba virus in Oligoryzomys fornesi from Brazilian Cerrado.

scientific article

Chronology of deep nodes in the neotropical primate phylogeny: insights from mitochondrial genomes

scientific article (publication date: 2012)

Combining fossil and molecular data to date the diversification of New World Primates

scientific article

Comparative evaluation of maximum parsimony and Bayesian phylogenetic reconstruction using empirical morphological data

Comparative evolutionary epidemiology of dengue virus serotypes

scientific article published on 27 December 2011

Complete genome sequences of two new virus isolates associated with cotton blue disease resistance breaking in Brazil.

scientific article published on 14 March 2015

Conventional simulation of biological sequences leads to a biased assessment of multi-Loci phylogenetic analysis

scientific article (publication date: 2013)

Data partitioning and correction for ascertainment bias reduce the uncertainty of placental mammal divergence times inferred from the morphological clock

article

Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study

scientific article

Detection of different South American hantaviruses.

scientific article published on 25 July 2015

Discovery and evolution of novel hemerythrin genes in annelid worms

scientific article

Diversification of the Genus Anopheles and a Neotropical Clade from the Late Cretaceous

scientific article

Estimation of the ancestral effective population sizes of African great apes under different selection regimes

scientific article

Evolution of Philodendron (Araceae) species in Neotropical biomes

scientific article

Evolution of TRIM5alpha B30.2 (SPRY) domain in New World primates

scientific article

Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification

scientific article

Evolutionary analysis of Chironius snakes unveils cryptic diversity and provides clues to diversification in the Neotropics

scientific article published on 10 August 2017

Expanded phylogenetic analyses of the class Heterotrichea (Ciliophora, Postciliodesmatophora) using five molecular markers and morphological data

scientific article

Floral evolution of Philodendron subgenus Meconostigma (Araceae)

scientific article (publication date: 2014)

Functional copies of the Mst77F gene on the Y chromosome of Drosophila melanogaster.

scientific article

Geological Changes of the Americas and their Influence on the Diversification of the Neotropical Kissing Bugs (Hemiptera: Reduviidae: Triatominae)

scientific article

Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection

scientific article published on 18 September 2012

Impact of long-term chromosomal shuffling on the multispecies coalescent analysis of two anthropoid primate lineages.

scientific article

Impact of the partitioning scheme on divergence times inferred from Mammalian genomic data sets

scientific article (publication date: 2012)

Incomplete lineage sorting impacts the inference of macroevolutionary regimes from molecular phylogenies when concatenation is employed: An analysis based on Cetacea

scholarly article by Anieli G Pereira & Carlos G Schrago published July 2018 in Ecology and Evolution

Incorrect handling of calibration information in divergence time inference: an example from volcanic islands

scientific article (publication date: March 2012)

Large ancestral effective population size explains the difficult phylogenetic placement of owl monkeys

scientific article published on 18 February 2019

Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome

scientific article published on 9 April 2015

MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies

scientific article

Molecular characterization of BK polyomavirus subtypes in renal transplant recipients in Brazil

article

Molecular evolution of α4 integrin binding site to lentiviral envelope proteins in new world primates.

scientific article

Morphology and phylogenetic position of an unusual Stentor polymorphus (Ciliophora: Heterotrichea) without symbiotic algae

scientific article published in May 2014

Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles

scientific article

Multispecies coalescent analysis confirms standing phylogenetic instability in Hexapoda

scientific article published on 16 August 2018

Multispecies coalescent analysis of the early diversification of neotropical primates: phylogenetic inference under strong gene trees/species tree conflict

scientific article

New bunya-like viruses: Highlighting their relations.

scientific article published on 19 January 2017

On the origin of HIV-1 subtype C in South America

scientific article published in October 2008

On the time scale of New World primate diversification.

scientific article published in March 2007

Performance of Hidden Markov Models in Recovering the Standard Classification of Glycoside Hydrolases

scientific article

Performance of genomic data sets on the estimation of the divergence time of New World and Old World anthropoids.

scientific article

Phylogenetic analysis of the S segment from Juquitiba hantavirus: identification of two distinct lineages in Oligoryzomys nigripes

scientific article published on 7 June 2013

Phylogenetic nomenclature and evolution of mannose-binding lectin (MBL2) haplotypes

scientific article

Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins

scientific article (publication date: 2011)

Positive Selection on HIV Accessory Proteins and the Analysis of Molecular Adaptation After Interspecies Transmission

article

Positive selection along the evolution of primate mitogenomes

scientific article published on 10 June 2013

Profile of small interfering RNAs from cotton plants infected with the polerovirus Cotton leafroll dwarf virus.

scientific article

Redescription and Phylogenetic Position of Condylostoma arenarium Spiegel, 1926 (Ciliophora, Heterotrichea) from Guanabara Bay, Brazil

scientific article

Sigmodontine rodents diversified in South America prior to the complete rise of the Panamanian Isthmus

article by Júlio F. Vilela et al published 27 December 2013 in Journal of Zoological Systematics and Evolutionary Research

Signatures of natural selection in tree topology shape of serially sampled viral phylogenies ⬇️

scientific article published in June 2023

Survey for positively selected coding regions in the genome of the hematophagous tsetse fly Glossina morsitans identifies candidate genes associated with feeding habits and embryonic development

scientific article published on 01 January 2020

Testing synchrony in historical biogeography: the case of new world primates and hystricognathi rodents

scientific article (publication date: 2012)

The effective population sizes of the anthropoid ancestors of the human-chimpanzee lineage provide insights on the historical biogeography of the great apes

scientific article published on 11 October 2013

The evolution of South American endemic canids: a history of rapid diversification and morphological parallelism.

scientific article

The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages

scientific article published on 11 September 2014

The limiting distribution of the effective population size of the ancestor of humans and chimpanzees

scientific article published on 14 May 2014

The origin of South American HIV-1 subtype C: lack of evidence for a Mozambican ancestry

article

The range of sampling times affects Zika virus evolutionary rates and divergence times

scientific article published on 09 October 2019

The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes

scientific article published in 2008

Timing the origin of New World monkeys

scientific article

List of works by Carlos G Schrago

Analysis of adaptive evolution in Lyssavirus genomes reveals pervasive diversifying selection during species diversification

Appropriate Assignment of Fossil Calibration Information Minimizes the Difference between Phylogenetic and Pedigree Mutation Rates in Humans

Arrival and diversification of mabuyine skinks (Squamata: Scincidae) in the Neotropics based on a fossil-calibrated timetree

Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time Estimates

Boronated tartrolon antibiotic produced by symbiotic cellulose-degrading bacteria in shipworm gills

Characterization and comparative analysis of a simian foamy virus complete genome isolated from Brazilian capuchin monkeys

Characterization of Juquitiba virus in Oligoryzomys fornesi from Brazilian Cerrado.

Chronology of deep nodes in the neotropical primate phylogeny: insights from mitochondrial genomes

Combining fossil and molecular data to date the diversification of New World Primates

Comparative evaluation of maximum parsimony and Bayesian phylogenetic reconstruction using empirical morphological data

Comparative evolutionary epidemiology of dengue virus serotypes

Complete genome sequences of two new virus isolates associated with cotton blue disease resistance breaking in Brazil.

Conventional simulation of biological sequences leads to a biased assessment of multi-Loci phylogenetic analysis

Data partitioning and correction for ascertainment bias reduce the uncertainty of placental mammal divergence times inferred from the morphological clock

Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study

Detection of different South American hantaviruses.

Discovery and evolution of novel hemerythrin genes in annelid worms

Diversification of the Genus Anopheles and a Neotropical Clade from the Late Cretaceous

Estimation of the ancestral effective population sizes of African great apes under different selection regimes

Evolution of Philodendron (Araceae) species in Neotropical biomes

Evolution of TRIM5alpha B30.2 (SPRY) domain in New World primates

Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification

Evolutionary analysis of Chironius snakes unveils cryptic diversity and provides clues to diversification in the Neotropics

Expanded phylogenetic analyses of the class Heterotrichea (Ciliophora, Postciliodesmatophora) using five molecular markers and morphological data

Floral evolution of Philodendron subgenus Meconostigma (Araceae)

Functional copies of the Mst77F gene on the Y chromosome of Drosophila melanogaster.

Geological Changes of the Americas and their Influence on the Diversification of the Neotropical Kissing Bugs (Hemiptera: Reduviidae: Triatominae)

Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection

Impact of long-term chromosomal shuffling on the multispecies coalescent analysis of two anthropoid primate lineages.

Impact of the partitioning scheme on divergence times inferred from Mammalian genomic data sets

Incomplete lineage sorting impacts the inference of macroevolutionary regimes from molecular phylogenies when concatenation is employed: An analysis based on Cetacea

Incorrect handling of calibration information in divergence time inference: an example from volcanic islands

Large ancestral effective population size explains the difficult phylogenetic placement of owl monkeys

Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome

MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies

Molecular characterization of BK polyomavirus subtypes in renal transplant recipients in Brazil

Molecular evolution of α4 integrin binding site to lentiviral envelope proteins in new world primates.

Morphology and phylogenetic position of an unusual Stentor polymorphus (Ciliophora: Heterotrichea) without symbiotic algae

Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles

Multispecies coalescent analysis confirms standing phylogenetic instability in Hexapoda

Multispecies coalescent analysis of the early diversification of neotropical primates: phylogenetic inference under strong gene trees/species tree conflict

New bunya-like viruses: Highlighting their relations.

On the origin of HIV-1 subtype C in South America

On the time scale of New World primate diversification.

Performance of Hidden Markov Models in Recovering the Standard Classification of Glycoside Hydrolases

Performance of genomic data sets on the estimation of the divergence time of New World and Old World anthropoids.

Phylogenetic analysis of the S segment from Juquitiba hantavirus: identification of two distinct lineages in Oligoryzomys nigripes

Phylogenetic nomenclature and evolution of mannose-binding lectin (MBL2) haplotypes

Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins

Positive Selection on HIV Accessory Proteins and the Analysis of Molecular Adaptation After Interspecies Transmission

Positive selection along the evolution of primate mitogenomes

Profile of small interfering RNAs from cotton plants infected with the polerovirus Cotton leafroll dwarf virus.

Redescription and Phylogenetic Position of Condylostoma arenarium Spiegel, 1926 (Ciliophora, Heterotrichea) from Guanabara Bay, Brazil

Sigmodontine rodents diversified in South America prior to the complete rise of the Panamanian Isthmus

Signatures of natural selection in tree topology shape of serially sampled viral phylogenies ⬇️

Survey for positively selected coding regions in the genome of the hematophagous tsetse fly Glossina morsitans identifies candidate genes associated with feeding habits and embryonic development

Testing synchrony in historical biogeography: the case of new world primates and hystricognathi rodents

The effective population sizes of the anthropoid ancestors of the human-chimpanzee lineage provide insights on the historical biogeography of the great apes

The evolution of South American endemic canids: a history of rapid diversification and morphological parallelism.

The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages

The limiting distribution of the effective population size of the ancestor of humans and chimpanzees

The origin of South American HIV-1 subtype C: lack of evidence for a Mozambican ancestry

The range of sampling times affects Zika virus evolutionary rates and divergence times

The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes

Timing the origin of New World monkeys