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List of works by Helen Piontkivska

A dominant role for CD8+-T-lymphocyte selection in simian immunodeficiency virus sequence variation

scientific article published on December 2004

Aspartic proteinase phylogeny and the origin of pregnancy-associated glycoproteins

scientific article published on 29 August 2003

Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data

scientific article published on 30 December 2020

Between-Host Evolution of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1: an Approach Based on Phylogenetically Independent Comparisons

scientific article published in February 2005

Between-host evolution of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1: an approach based on phylogenetically independent comparisons

scientific article

Biomineralization-related specialization of hemocytes and mantle tissues of the Pacific oyster Crassostrea gigas

scientific article published on 30 June 2017

CD8+ T cells from SIV elite controller macaques recognize Mamu-B*08-bound epitopes and select for widespread viral variation

scientific article published on 14 November 2007

Comparative mitochondrial genomics of freshwater mussels (Bivalvia: Unionoida) with doubly uniparental inheritance of mtDNA: gender-specific open reading frames and putative origins of replication

scientific article (publication date: December 2009)

Comprehensive immunological evaluation reveals surprisingly few differences between elite controller and progressor Mamu-B*17-positive simian immunodeficiency virus-infected rhesus macaques

scientific article published on 2 April 2008

Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts

scientific article

Discovery of novel targets for multi-epitope vaccines: screening of HIV-1 genomes using association rule mining

scientific article published on 06 July 2009

Dysregulation of RNA editing may help explain pathogenicity mechanisms of congenital Zika syndrome and Guillain-Barre syndrome

scholarly article published 3 December 2018

Dysregulation of RNA editing may help explain pathogenicity mechanisms of congenital Zika syndrome and Guillain-Barre syndrome

scholarly article published 3 December 2018

Effects of intermittent hypoxia on cell survival and inflammatory responses in the intertidal marine bivalves Mytilus edulis and Crassostrea gigas

scientific article published on 17 February 2020

Environmental kinetoplastid-like 18S rRNA sequences and phylogenetic relationships among Trypanosomatidae: Paraphyly of the genus Trypanosoma

scholarly article by Helen Piontkivska & Austin L Hughes published November 2005 in Molecular and Biochemical Parasitology

Evolutionary diversification of the avian fatty acid-binding proteins ⬇️

scientific article published on December 15, 2011

Explaining Pathogenicity of Congenital Zika and Guillain-Barré Syndromes: Does Dysregulation of RNA Editing Play a Role?

scientific article published on 20 May 2019

Frequent associations between CTL and T-Helper epitopes in HIV-1 genomes and implications for multi-epitope vaccine designs

scientific article

Functional diversification of the toll-like receptor gene family

scientific article published on 16 April 2008

Interactive effects of salinity variation and exposure to ZnO nanoparticles on the innate immune system of a sentinel marine bivalve, Mytilus edulis

scientific article published on 07 January 2020

Interferons and viruses induce a novel truncated ACE2 isoform and not the full-length SARS-CoV-2 receptor

scientific article published on 19 October 2020

Machine Learning Maps Research Needs in COVID-19 Literature

scientific article published on 16 September 2020

Machine Learning Maps Research Needs in COVID-19 Literature

preprint

Matchmaking in Bioinformatics

scientific article published on 9 February 2018

Molecular Biomarkers of the Mitochondrial Quality Control Are Differently Affected by Hypoxia-Reoxygenation Stress in Marine Bivalves Crassostrea gigas and Mytilus edulis

scientific article published in 2020

Molecular characterization and expression of a novel homolog of uncoupling protein 5 (UCP5) from the eastern oyster Crassostrea virginica (Bivalvia: Ostreidae).

scientific article

Molecular characterization and mRNA expression of two key enzymes of hypoxia-sensing pathways in eastern oysters Crassostrea virginica (Gmelin): hypoxia-inducible factor α (HIF-α) and HIF-prolyl hydroxylase (PHD).

scientific article

Molecular phylogenetics of Trypanosomatidae: contrasting results from 18S rRNA and protein phylogenies ⬇️

scientific article published on October 28, 2003

Multi-species sequence comparison reveals dynamic evolution of the elastin gene that has involved purifying selection and lineage-specific insertions/deletions

scientific article

Novel protein genes in animal mtDNA: a new sex determination system in freshwater mussels (Bivalvia: Unionoida)?

scientific article

Nucleotide sequence polymorphism in circoviruses

scientific article published on 17 November 2007

Patterns of sequence evolution at epitopes for host antibodies and cytotoxic T-lymphocytes in human immunodeficiency virus type 1.

scientific article published on 7 October 2005

Phylogeny of Trypanosomatidae and Bodonidae (Kinetoplastida) based on 18S rRNA: evidence for paraphyly of Trypanosoma and six other genera

scientific article published on 2 April 2003

Potential trade-offs between biomineralization and immunity revealed by shell properties and gene expression profiles of two closely related species

article

Pyganodon (Bivalvia: Unionoida: Unionidae) phylogenetics: a male- and female-transmitted mitochondrial DNA perspective.

scientific article

RNA editing by the host ADAR system affects the molecular evolution of the Zika virus

scientific article

Rapid fixation of a distinctive sequence motif in the 3′ noncoding region of the clade of West Nile virus invading North America ⬇️

scientific article (publication date: 15 September 2007)

Role of host-driven mutagenesis in determining genome evolution of sigma virus (DMelSV; Rhabdoviridae) in Drosophila melanogaster

scientific article published on 10 September 2016

Seasonality of birth defects in West Africa: could congenital Zika syndrome be to blame?

scientific article published on 7 February 2018

Seasonality of birth defects in West Africa: could congenital Zika syndrome be to blame?

scientific article

Shedding light on lipid metabolism in Kinetoplastida: A phylogenetic analysis of phospholipase D protein homologs.

scientific article

The Role of the Vascular Endothelial Growth Factor (VEGF) Signaling in Biomineralization of the Oyster Crassostrea gigas

scientific article published in 2018

Transcriptional response of key metabolic and stress response genes of a nuculanid bivalve, Lembulus bicuspidatus from an oxygen minimum zone exposed to hypoxia-reoxygenation

scientific article published in 2021

Within-host evolution of CD8+-TL epitopes encoded by overlapping and non-overlapping reading frames of simian immunodeficiency virus

scientific article

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