List of works - Stéphane Aris-Brosou

A Not-So-Long Introduction to Computational Molecular Evolution

scientific article published on 01 January 2019

A time line of the environmental genetics of the haptophytes

scientific article

Adaptive evolution of HIV at HLA epitopes is associated with ethnicity in Canada

scientific article

Approximate Bayesian Computation Algorithms for Estimating Network Model Parameters

article

Automatic detection of rate change in large data sets with an unsupervised approach: the case of influenza viruses

scientific article

Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa

scientific article published on 29 August 2003

Biotransport of Metallic Trace Elements from Marine to Terrestrial Ecosystems by Seabirds

scientific article published on 29 November 2018

Both Epistasis and Diversifying Selection Drive the Structural Evolution of the Ebola Virus Glycoprotein Mucin-Like Domain

scientific article

Breeding phenology and winter activity predict subsequent breeding success in a trans-global migratory seabird

scientific article published on October 2015

Characterization and functional divergence of the alpha 1-adrenoceptor gene family: insights from rainbow trout (Oncorhynchus mykiss).

scientific article published on 16 October 2007

Comparative dynamics and distribution of influenza drug resistance acquisition to protein m2 and neuraminidase inhibitors.

scientific article

Dating phylogenies with hybrid local molecular clocks

scientific article (publication date: 12 September 2007)

Determinants of adaptive evolution at the molecular level: the extended complexity hypothesis

scientific article published on 13 October 2004

Dual foraging and pair coordination during chick provisioning by Manx shearwaters: empirical evidence supported by a simple model

scientific article published on 11 May 2015

Early evolution of ionotropic GABA receptors and selective regimes acting on the mammalian-specific theta and epsilon subunits

scientific article

Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny

article

Estimation of sub-epidemic dynamics by means of Sequential Monte Carlo Approximate Bayesian Computation: an application to the Swiss HIV Cohort Study

article

Evidence of a nonadaptive buildup of mutational load in human populations over the past 40,000 years

article

Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans

scientific article (publication date: 4 August 2009)

Fast Bayesian choice of phylogenetic models: prospecting data augmentation-based thermodynamic integration

scientific article

Flight costs in volant vertebrates: A phylogenetically-controlled meta-analysis of birds and bats

scientific article published on 11 June 2019

Foraging flexibility and search patterns are unlinked during breeding in a free-ranging seabird

scientific article published on 14 March 2016

Genetic diversity as a marker for timing infection in HIV-infected patients: evaluation of a 6-month window and comparison with BED.

scientific article published on 23 July 2012

Genome analyses suggest the presence of polyploidy and recent human-driven expansions in eight global populations of the honeybee pathogen Nosema ceranae

scientific article published on 27 April 2015

Habitat-specific type I polyketide synthases in soils and street sediments

scientific article published on 16 November 2013

How Bayes tests of molecular phylogenies compare with frequentist approaches

scientific article published on 01 March 2003

How the Central American Seaway and an Ancient Northern Passage Affected Flatfish Diversification

scholarly article by Lisa Byrne published in May 2018

How the Central American Seaway and an ancient northern passage affected flatfish diversification

Identifying genetic determinants of complex phenotypes from whole genome sequence data

scientific article published on 10 June 2019

Identifying genetic determinants of complex phenotypes from whole genome sequence data and very small training sets

Identifying sites under positive selection with uncertain parameter estimates

scientific article

Identifying the drivers of computationally detected correlated evolution among sites under antibiotic selection

scientific article published on 13 February 2020

Incubation patterns in a central-place forager affect lifetime reproductive success: scaling of patterns from a foraging bout to a lifetime

scientific article

Inferring influenza global transmission networks without complete phylogenetic information.

scientific article

Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation

scientific article

Microbial DNA records historical delivery of anthropogenic mercury

scientific article

Microbial community structure in lake and wetland sediments from a high Arctic polar desert revealed by targeted transcriptomics

scientific article

Phylodynamics of the emergence of influenza viruses after cross-species transmission

scientific article

Phylogenetic analyses: A toolbox expanding towards Bayesian methods

scientific article (publication date: 2008)

Physicochemical Drivers of Microbial Community Structure in Sediments of Lake Hazen, Nunavut, Canada.

scientific article published on 5 June 2018

Physiological constraints and dive behavior scale in tandem with body mass in auks: A comparative analysis

scientific article published on 4 March 2016

Predicting the Reasons of Customer Complaints: A First Step Toward Anticipating Quality Issues of In Vitro Diagnostics Assays with Machine Learning.

scientific article

Predicting the emergence of H3N2 influenza viruses reveals contrasted modes of evolution of HA and NA antigens.

scientific article

Spatial and temporal dynamics of rabies virus variants in big brown bat populations across Canada: footprints of an emerging zoonosis

scientific article published on 16 April 2010

Swift evolutionary response of microbes to a rise in anthropogenic mercury in the Northern Hemisphere

scientific article published on 12 December 2019

The essentials of computational molecular evolution

scientific article published on January 2012

The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism

scientific article published in March 1996

The metabolic consequences of hepatic AMP-kinase phosphorylation in rainbow trout

scientific article (publication date: 2011)

The nonadaptive nature of the H1N1 2009 Swine Flu pandemic contrasts with the adaptive facilitation of transmission to a new host

scientific article

Timing of the functional diversification of alpha- and beta-adrenoceptors in fish and other vertebrates

scientific article

Viral Long-Term Evolutionary Strategies Favor Stability over Proliferation

scientific article published on 24 July 2019

Viral outbreaks involve destabilised viruses: evidence from Ebola, Influenza and Zika

scientific article

Viral outbreaks involve destabilized evolutionary networks: evidence from Ebola, Influenza and Zika

scientific article published on 19 September 2017

Widespread Historical Contingency in Influenza Viruses

scientific article published on 9 November 2016

List of works by Stéphane Aris-Brosou

A Not-So-Long Introduction to Computational Molecular Evolution

A time line of the environmental genetics of the haptophytes

Adaptive evolution of HIV at HLA epitopes is associated with ethnicity in Canada

Approximate Bayesian Computation Algorithms for Estimating Network Model Parameters

Automatic detection of rate change in large data sets with an unsupervised approach: the case of influenza viruses

Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa

Biotransport of Metallic Trace Elements from Marine to Terrestrial Ecosystems by Seabirds

Both Epistasis and Diversifying Selection Drive the Structural Evolution of the Ebola Virus Glycoprotein Mucin-Like Domain

Breeding phenology and winter activity predict subsequent breeding success in a trans-global migratory seabird

Characterization and functional divergence of the alpha 1-adrenoceptor gene family: insights from rainbow trout (Oncorhynchus mykiss).

Comparative dynamics and distribution of influenza drug resistance acquisition to protein m2 and neuraminidase inhibitors.

Dating phylogenies with hybrid local molecular clocks

Determinants of adaptive evolution at the molecular level: the extended complexity hypothesis

Dual foraging and pair coordination during chick provisioning by Manx shearwaters: empirical evidence supported by a simple model

Early evolution of ionotropic GABA receptors and selective regimes acting on the mammalian-specific theta and epsilon subunits

Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny

Estimation of sub-epidemic dynamics by means of Sequential Monte Carlo Approximate Bayesian Computation: an application to the Swiss HIV Cohort Study

Evidence of a nonadaptive buildup of mutational load in human populations over the past 40,000 years

Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans

Fast Bayesian choice of phylogenetic models: prospecting data augmentation-based thermodynamic integration

Flight costs in volant vertebrates: A phylogenetically-controlled meta-analysis of birds and bats

Foraging flexibility and search patterns are unlinked during breeding in a free-ranging seabird

Genetic diversity as a marker for timing infection in HIV-infected patients: evaluation of a 6-month window and comparison with BED.

Genome analyses suggest the presence of polyploidy and recent human-driven expansions in eight global populations of the honeybee pathogen Nosema ceranae

Habitat-specific type I polyketide synthases in soils and street sediments

How Bayes tests of molecular phylogenies compare with frequentist approaches

How the Central American Seaway and an Ancient Northern Passage Affected Flatfish Diversification

How the Central American Seaway and an ancient northern passage affected flatfish diversification

Identifying genetic determinants of complex phenotypes from whole genome sequence data

Identifying genetic determinants of complex phenotypes from whole genome sequence data and very small training sets

Identifying sites under positive selection with uncertain parameter estimates

Identifying the drivers of computationally detected correlated evolution among sites under antibiotic selection

Incubation patterns in a central-place forager affect lifetime reproductive success: scaling of patterns from a foraging bout to a lifetime

Inferring influenza global transmission networks without complete phylogenetic information.

Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation

Microbial DNA records historical delivery of anthropogenic mercury

Microbial community structure in lake and wetland sediments from a high Arctic polar desert revealed by targeted transcriptomics

Phylodynamics of the emergence of influenza viruses after cross-species transmission

Phylogenetic analyses: A toolbox expanding towards Bayesian methods

Physicochemical Drivers of Microbial Community Structure in Sediments of Lake Hazen, Nunavut, Canada.

Physiological constraints and dive behavior scale in tandem with body mass in auks: A comparative analysis

Predicting the Reasons of Customer Complaints: A First Step Toward Anticipating Quality Issues of In Vitro Diagnostics Assays with Machine Learning.

Predicting the emergence of H3N2 influenza viruses reveals contrasted modes of evolution of HA and NA antigens.

Spatial and temporal dynamics of rabies virus variants in big brown bat populations across Canada: footprints of an emerging zoonosis

Swift evolutionary response of microbes to a rise in anthropogenic mercury in the Northern Hemisphere

The essentials of computational molecular evolution

The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism

The metabolic consequences of hepatic AMP-kinase phosphorylation in rainbow trout

The nonadaptive nature of the H1N1 2009 Swine Flu pandemic contrasts with the adaptive facilitation of transmission to a new host

Timing of the functional diversification of alpha- and beta-adrenoceptors in fish and other vertebrates

Viral Long-Term Evolutionary Strategies Favor Stability over Proliferation

Viral outbreaks involve destabilised viruses: evidence from Ebola, Influenza and Zika

Viral outbreaks involve destabilized evolutionary networks: evidence from Ebola, Influenza and Zika

Widespread Historical Contingency in Influenza Viruses

Widespread Historical Contingency in Influenza Viruses