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List of works by Joel P. Arrais

A Cytoscape-Based Web Tool for Representing Protein Networks

A Microarray Information Database

CanisOme--The protein signatures of Canis lupus familiaris diseases

scientific article

Challenges Storing and Representing Biomedical Data

Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction

scientific article

Computational methodology for predicting the landscape of the human-microbial interactome region level influence

scientific article published on 11 August 2015

Computational prediction of the human-microbial oral interactome

scientific article

Concept-based query expansion for retrieving gene related publications from MEDLINE.

scientific article

Data Integration Solution for Organ-Specific Studies: An Application for Oral Biology

Dynamic service integration using web-based workflows

DynamicFlow: A Client-Side Workflow Management System

Enchytraeus albidus microarray: enrichment, design, annotation and database (EnchyBASE).

scientific article

Ensemble-Based Methodology for the Prediction of Drug-Target Interactions

From protein-protein interactions to rational drug design: are computational methods up to the challenge?

scientific article published on January 2013

From the salivary proteome to the OralOme: comprehensive molecular oral biology

scientific article published on 28 January 2012

Gene-disease prioritization through biomedical networks

article

GeneBrowser 2: an application to explore and identify common biological traits in a set of genes

scientific article

Handling Noise in Protein Interaction Networks

scientific article published on 30 October 2019

Hardware/Software Implementation of FPGA-Targeted Matrix-Oriented SAT Solvers

Improving Literature Searches in Gene Expression Studies

article

Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure.

scientific article

Metagenomic Analysis of the Saliva Microbiome with Merlin

Mixed-Integer Programming Model for Profiling Disease Biomarkers from Gene Expression Studies

article

New Targets for Zika Virus Determined by Human-Viral Interactomic: A Bioinformatics Approach

scientific article published on 12 December 2017

On the exploitation of cloud computing in bioinformatics

scholarly article published November 2010

OralCard: a bioinformatic tool for the study of oral proteome

scientific article

Parallel DNA pyrosequencing unveils new zebrafish microRNAs

scientific article

Quantitative Characterization of Protein Networks of the Oral Cavity

RecRWR: a recursive random walk method for improved identification of diseases

scientific article

Reconstructing the temporal progression of HIV-1 immune response pathways

scientific article published on June 2016

SalivaPRINT Toolkit - Protein profile evaluation and phenotype stratification

scientific article published on 23 August 2017

The Road to Personalized Medicine in Alzheimer’s Disease: The Use of Artificial Intelligence

scientific article published in 2022

The landscape of protein biomarkers proposed for periodontal disease: markers with functional meaning

scientific article published on 26 June 2014

Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions

scientific article published in August 2015

Weighted Gene Co-expression Network Analysis Applied to Head and Neck Squamous Cell Carcinoma Data

article

geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification

scientific article

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