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List of works by Jonathan E. Rubin

A Boundary Value Approach to Optimization with an Application to Salmonella Competition.

scientific article published on 27 June 2015

A closed-loop model of the respiratory system: focus on hypercapnia and active expiration

scientific article

A computational model for estimating recruitment of primary afferent fibers by intraneural stimulation in the dorsal root ganglia ⬇️

scientific article published on August 16, 2011

A dynamical systems analysis of afferent control in a neuromechanical model of locomotion: I. Rhythm generation ⬇️

scientific article published on November 4, 2011

A dynamical systems analysis of afferent control in a neuromechanical model of locomotion: II. Phase asymmetry.

scientific article published on 4 November 2011

A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration

scientific article published on 17 April 2006

A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation

scientific article published on 3 April 2006

An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: Results from parameter space reduction

scientific article published on 04 May 2008

Axonal and synaptic failure suppress the transfer of firing rate oscillations, synchrony and information during high frequency deep brain stimulation

scientific article published on 16 September 2013

Basal ganglia activity patterns in parkinsonism and computational modeling of their downstream effects

scientific article

Bursting induced by excitatory synaptic coupling in nonidentical conditional relaxation oscillators or square-wave bursters

scientific article published on 21 August 2006

Calcium time course as a signal for spike-timing-dependent plasticity

scientific article published on 29 December 2004

Competition Between Transients in the Rate of Approach to a Fixed Point.

scientific article

Complex bursting dynamics in an embryonic respiratory neuron model

scientific article published on 01 April 2020

Computational models of basal ganglia dysfunction: the dynamics is in the details

scientific article published on 7 September 2017

Computational models of the neural control of breathing

scientific article published on 23 December 2016

Conditions for Multi-functionality in a Rhythm Generating Network Inspired by Turtle Scratching.

scientific article

Cooperation of intrinsic bursting and calcium oscillations underlying activity patterns of model pre-Bötzinger complex neurons ⬇️

scientific article published on September 28, 2012

Correlation transfer from basal ganglia to thalamus in Parkinson's disease

scientific article published on 13 December 2011

Deep brain stimulation entrains local neuronal firing in human globus pallidus internus ⬇️

scientific article published on November 28, 2012

Effects of persistent sodium current blockade in respiratory circuits depend on the pharmacological mechanism of action and network dynamics

scientific article published on 30 August 2019

Emergent bursting in small networks of model conditional pacemakers in the pre-Bötzinger complex.

scientific article published in January 2008

Equation-based models of dynamic biological systems.

scientific article published on 14 May 2008

Equilibrium properties of temporally asymmetric Hebbian plasticity

scientific article published in January 2001

Explicit maps to predict activation order in multiphase rhythms of a coupled cell network.

scientific article published on 12 March 2012

First return maps for the dynamics of synaptically coupled conditional bursters

scientific article published on 8 July 2010

From inverse problems in mathematical physiology to quantitative differential diagnoses

scientific article

Giant squid-hidden canard: the 3D geometry of the Hodgkin-Huxley model.

scientific article published on 26 April 2007

Identifying control ensembles for information processing within the cortico-basal ganglia-thalamic circuit

scientific article published on 23 June 2022

In silico models of acute inflammation in animals.

scientific article published on September 2006

Interacting oscillations in neural control of breathing: modeling and qualitative analysis.

scientific article published on 7 October 2010

Interactions of persistent sodium and calcium-activated nonspecific cationic currents yield dynamically distinct bursting regimes in a model of respiratory neurons ⬇️

scientific article published on January 15, 2011

Irregular activity arises as a natural consequence of synaptic inhibition

scientific article published in December 2013

Localized activity patterns in excitatory neuronal networks

scientific article published in May 2004

Localized bumps of activity sustained by inhibition in a two-layer thalamic network

scientific article published in May 2001

Locally Contractive Dynamics in Generalized Integrate-and-Fire Neurons

scientific article published on September 2013

Mathematical modeling of energy consumption in the acute inflammatory response

scientific article published on 25 August 2018

Mechanistic simulations of inflammation: current state and future prospects.

scientific article published on 26 August 2008

Mixed-mode oscillations and population bursting in the pre-Bötzinger complex

scientific article published on 14 March 2016

Modeling the interactions of bacteria and Toll-like receptor-mediated inflammation in necrotizing enterocolitis ⬇️

scientific article published on December 10, 2012

Modulation of LTP/LTD balance in STDP by an activity-dependent feedback mechanism

scientific article published on 30 June 2009

Multi-site stimulation of subthalamic nucleus diminishes thalamocortical relay errors in a biophysical network model ⬇️

scientific article published on March 16, 2011

Multi-timescale systems and fast-slow analysis.

scientific article published on 14 July 2016

Multiple rhythmic states in a model of the respiratory central pattern generator

scientific article

Multiple timescale mixed bursting dynamics in a respiratory neuron model

scientific article published on 5 August 2016

Multiple-spike waves in a one-dimensional integrate-and-fire neural network

scientific article published on 20 August 2003

NMDA-induced burst firing in a model subthalamic nucleus neuron

scientific article published on 11 May 2011

Neural activity during a simple reaching task in macaques is counter to gating and rebound in basal ganglia-thalamic communication

scientific article published on 13 October 2020

Pallidostriatal Projections Promote β Oscillations in a Dopamine-Depleted Biophysical Network Model

scientific article published on May 2016

Paying Our Dues: The Role of Professional Societies in the Evolution of Mathematical Biology Education

scientific article published on 12 May 2020

Principal components derived from CSF inflammatory profiles predict outcome in survivors after severe traumatic brain injury

scientific article published on 16 December 2015

Reduced computational modelling of Kölliker-Fuse contributions to breathing patterns in Rett syndrome

scientific article published on 16 April 2019

Reward-driven changes in striatal pathway competition shape evidence evaluation in decision-making

scientific article published on 06 May 2019

Robustness of respiratory rhythm generation across dynamic regimes

scientific article published on 30 July 2019

Role of the indirect pathway of the basal ganglia in perceptual decision making

scientific article

Short term synaptic depression imposes a frequency dependent filter on synaptic information transfer

scientific article

Steady states in an iterative model for multiplicative spike-timing-dependent plasticity

scientific article published in May 2001

Strong interactions between spinal cord networks for locomotion and scratching

scientific article published on 06 July 2011

Surprising effects of synaptic excitation

scientific article published in June 2005

Synchronisation hubs in the visual cortex may arise from strong rhythmic inhibition during gamma oscillations.

scientific article

Thalamocortical relay fidelity varies across subthalamic nucleus deep brain stimulation protocols in a data-driven computational model

scientific article

The Interaction of Intrinsic Dynamics and Network Topology in Determining Network Burst Synchrony ⬇️

scientific article published on February 18, 2011

The effects of chloride dynamics on substantia nigra pars reticulata responses to pallidal and striatal inputs

scientific article published on 07 September 2020

The roles of ascending sensory signals and top-down central control in the entrainment of a locomotor CPG

scientific article published on 08 December 2020

The selection of mixed-mode oscillations in a Hodgkin-Huxley model with multiple timescales.

scientific article published in March 2008

The spatial structure of correlated neuronal variability.

scientific article published on 31 October 2016

Timescales and Mechanisms of Sigh-Like Bursting and Spiking in Models of Rhythmic Respiratory Neurons.

scientific article published on 6 June 2017

Translational systems approaches to the biology of inflammation and healing

scientific article

Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis

scientific article

Using nonlinear model predictive control to find optimal therapeutic strategies to modulate inflammation

scientific article published in October 2010

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