List of works - Terry Gaasterland

A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium

scientific article

A computational investigation of kinetoplastid trans-splicing

scientific article

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm

scientific article

A functional update of the Escherichia coli K-12 genome

scientific article

Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific

scientific article

An organism-specific method to rank predicted coding regions in Trypanosoma brucei ⬇️

scientific article published on October 15, 2003

Analysis of SOX2-expressing cell populations derived from human pluripotent stem cells

scientific article published on 31 October 2013

Assessing the Association of Mitochondrial Genetic Variation With Primary Open-Angle Glaucoma Using Gene-Set Analyses

scientific article published on September 2016

Association of CAV1/CAV2 genomic variants with primary open-angle glaucoma overall and by gender and pattern of visual field loss

scientific article published on 25 October 2013

Automated querying and identification of novel peptides using MALDI mass spectrometric imaging

scientific article

Biomedical impact of splicing mutations revealed through exome sequencing

scientific article published on 30 March 2012

CDKN2B-AS1 genotype-glaucoma feature correlations in primary open-angle glaucoma patients from the United States

scientific article published on 27 October 2012

CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA.

scientific article

Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana

scientific article (publication date: 2011)

Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma

scientific article

Computational prediction and experimental validation of Ciona intestinalis microRNA genes

scientific article

Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes

scientific article

DNA copy number variants of known glaucoma genes in relation to primary open-angle glaucoma

scientific article

DarkHorse: a method for genome-wide prediction of horizontal gene transfer

scientific article published on January 2007

Endogenous WNT signaling regulates hPSC-derived neural progenitor cell heterogeneity and specifies their regional identity

scientific article

Estrogen pathway polymorphisms in relation to primary open angle glaucoma: an analysis accounting for gender from the United States

scientific article published on 12 July 2013

Exome analysis identified a novel mutation in the RBP4 gene in a consanguineous pedigree with retinal dystrophy and developmental abnormalities

scientific article

Extensive and genome-wide changes in the transcription profile of Staphylococcus aureus induced by modulating the transcription of the cell wall synthesis gene murF.

scientific article published on 28 December 2006

Generation of an expandable intermediate mesoderm restricted progenitor cell line from human pluripotent stem cells

scientific article

Genetic correlations between intraocular pressure, blood pressure and primary open-angle glaucoma: a multi-cohort analysis

scientific article published on 30 August 2017

Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma

scientific article published on 11 January 2016

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

scientific article

Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1.

scientific article published on 14 March 2008

Genomic resources for songbird research and their use in characterizing gene expression during brain development

scientific article (publication date: 17 April 2007)

Hypothesis-independent pathway analysis implicates GABA and acetyl-CoA metabolism in primary open-angle glaucoma and normal-pressure glaucoma

scientific article

ISCB's Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing

scientific article

ISCB's initial reaction to New England Journal of Medicine editorial on data sharing

scientific article

Identification of a novel mutation in the CDHR1 gene in a family with recessive retinal degeneration

scientific article published on October 2012

Identification of transcription coactivator OCA-B-dependent genes involved in antigen-dependent B cell differentiation by cDNA array analyses

scientific article

Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination

scientific article

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome

scientific article

Let-7 coordinately suppresses components of the amino acid sensing pathway to repress mTORC1 and induce autophagy

scientific article published on October 2014

Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics

scientific article published in March 2008

Mild iron overload in an African American man with SLC40A1 D270V.

scientific article published on 15 May 2012

Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana

scientific article

Multiple changes in peptide and lipid expression associated with regeneration in the nervous system of the medicinal leech

scientific article

PPAR-δ is repressed in Huntington's disease, is required for normal neuronal function and can be targeted therapeutically

scientific article published on 7 December 2015

Paving the future: finding suitable ISMB venues

scientific article

Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets

scientific article

Prediction and identification of herpes simplex virus 1-encoded microRNAs

scientific article

Prediction of cyclin-dependent kinase phosphorylation substrates

scientific article published in August 2007

Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome

scientific article published on September 2002

Spliced leader RNA trans-splicing in dinoflagellates

scholarly article

Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome

scientific article

The NEIGHBOR consortium primary open-angle glaucoma genome-wide association study: rationale, study design, and clinical variables

scientific article

The WNT receptor FZD7 is required for maintenance of the pluripotent state in human embryonic stem cells

scientific article published on 13 January 2014

The WNT target SP5 negatively regulates WNT transcriptional programs in human pluripotent stem cells.

scientific article published on 18 October 2017

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

scientific article

The complete genome of the hyperthermophilic bacterium Aquifex aeolicus

scientific article

The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.

scientific article published on October 2010

The genome of the sea urchin Strongylocentrotus purpuratus

scientific article

The medicinal leech genome encodes 21 innexin genes: different combinations are expressed by identified central neurons

scientific article

The small RNA profile during Drosophila melanogaster development

scientific article (publication date: August 2003)

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

scientific article

Top-Down Atmospheric Ionization Mass Spectrometry Microscopy Combined With Proteogenomics

scientific article published on 10 July 2017

Vespucci: a system for building annotated databases of nascent transcripts

scientific article published on 04 December 2013

WNT5A encodes two isoforms with distinct functions in cancers

scientific article

List of works by Terry Gaasterland

A Common Variant in MIR182 Is Associated With Primary Open-Angle Glaucoma in the NEIGHBORHOOD Consortium

A computational investigation of kinetoplastid trans-splicing

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm

A functional update of the Escherichia coli K-12 genome

Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific

An organism-specific method to rank predicted coding regions in Trypanosoma brucei ⬇️

Analysis of SOX2-expressing cell populations derived from human pluripotent stem cells

Assessing the Association of Mitochondrial Genetic Variation With Primary Open-Angle Glaucoma Using Gene-Set Analyses

Association of CAV1/CAV2 genomic variants with primary open-angle glaucoma overall and by gender and pattern of visual field loss

Automated querying and identification of novel peptides using MALDI mass spectrometric imaging

Biomedical impact of splicing mutations revealed through exome sequencing

CDKN2B-AS1 genotype-glaucoma feature correlations in primary open-angle glaucoma patients from the United States

CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA.

Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana

Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma

Computational prediction and experimental validation of Ciona intestinalis microRNA genes

Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes

DNA copy number variants of known glaucoma genes in relation to primary open-angle glaucoma

DarkHorse: a method for genome-wide prediction of horizontal gene transfer

Endogenous WNT signaling regulates hPSC-derived neural progenitor cell heterogeneity and specifies their regional identity

Estrogen pathway polymorphisms in relation to primary open angle glaucoma: an analysis accounting for gender from the United States

Exome analysis identified a novel mutation in the RBP4 gene in a consanguineous pedigree with retinal dystrophy and developmental abnormalities

Extensive and genome-wide changes in the transcription profile of Staphylococcus aureus induced by modulating the transcription of the cell wall synthesis gene murF.

Generation of an expandable intermediate mesoderm restricted progenitor cell line from human pluripotent stem cells

Genetic correlations between intraocular pressure, blood pressure and primary open-angle glaucoma: a multi-cohort analysis

Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1.

Genomic resources for songbird research and their use in characterizing gene expression during brain development

Hypothesis-independent pathway analysis implicates GABA and acetyl-CoA metabolism in primary open-angle glaucoma and normal-pressure glaucoma

ISCB's Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing

ISCB's initial reaction to New England Journal of Medicine editorial on data sharing

Identification of a novel mutation in the CDHR1 gene in a family with recessive retinal degeneration

Identification of transcription coactivator OCA-B-dependent genes involved in antigen-dependent B cell differentiation by cDNA array analyses

Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome

Let-7 coordinately suppresses components of the amino acid sensing pathway to repress mTORC1 and induce autophagy

Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics

Mild iron overload in an African American man with SLC40A1 D270V.

Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana

Multiple changes in peptide and lipid expression associated with regeneration in the nervous system of the medicinal leech

PPAR-δ is repressed in Huntington's disease, is required for normal neuronal function and can be targeted therapeutically

Paving the future: finding suitable ISMB venues

Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets

Prediction and identification of herpes simplex virus 1-encoded microRNAs

Prediction of cyclin-dependent kinase phosphorylation substrates

Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome

Spliced leader RNA trans-splicing in dinoflagellates

Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome

The NEIGHBOR consortium primary open-angle glaucoma genome-wide association study: rationale, study design, and clinical variables

The WNT receptor FZD7 is required for maintenance of the pluripotent state in human embryonic stem cells

The WNT target SP5 negatively regulates WNT transcriptional programs in human pluripotent stem cells.

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

The complete genome of the hyperthermophilic bacterium Aquifex aeolicus

The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.

The genome of the sea urchin Strongylocentrotus purpuratus

The medicinal leech genome encodes 21 innexin genes: different combinations are expressed by identified central neurons

The small RNA profile during Drosophila melanogaster development

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

Top-Down Atmospheric Ionization Mass Spectrometry Microscopy Combined With Proteogenomics

Vespucci: a system for building annotated databases of nascent transcripts

WNT5A encodes two isoforms with distinct functions in cancers