List of works - Mayuko Takeda-Shitaka

CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area

scientific article

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

scientific article

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

scientific article

Comprehensive analysis of the Co-structures of dipeptidyl peptidase IV and its inhibitor

scientific article

Evaluation of homology modeling of the severe acute respiratory syndrome (SARS) coronavirus main protease for structure based drug design

scientific article

Evaluation of the third solvent clusters fitting procedure for the prediction of protein-protein interactions based on the results at the CAPRI blind docking study

scientific article

FAMSD: A powerful protein modeling platform that combines alignment methods, homology modeling, 3D structure quality estimation and molecular dynamics.

scientific article

Fams-ace: a combined method to select the best model after remodeling all server models.

scientific article

HUMAN FAMSD-BASE: high quality protein structure model database for the human genome using the FAMSD homology modeling method.

scientific article

Identification of amino acid residues of Salmonella SlyA that are critical for transcriptional regulation

scientific article

Interaction between the antigen and antibody is controlled by the constant domains: Normal mode dynamics of the HEL–HyHEL‐10 complex ⬇️

scientific article published on October 1, 2003

LB3D: A Protein Three-Dimensional Substructure Search Program Based on the Lower Bound of a Root Mean Square Deviation Value ⬇️

scientific article published on April 17, 2012

Method for predicting homology modeling accuracy from amino acid sequence alignment: the power function.

scientific article

Molecular characterization of ADAMTS13 gene mutations in Japanese patients with Upshaw-Schulman syndrome ⬇️

scientific article published on October 16, 2003

New protein structure model evaluation methods that include a side-chain consensus score for the protein modeling.

scientific article

Protein structure prediction in CASP6 using CHIMERA and FAMS.

scientific article

Protein structure prediction in structure based drug design.

scientific article

Quality assessment methods for 3D protein structure models based on a residue-residue distance matrix prediction.

scientific article

Remarkably different structures and reaction mechanisms of ketoreductases for the opposite stereochemical control in the biosynthesis of BIQ antibiotics

scientific article published in November 2004

Searching for protein-protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues

scientific article published in August 2005

Topology of AspT, the aspartate:alanine antiporter of Tetragenococcus halophilus, determined by site-directed fluorescence labeling

scientific article published on 27 July 2007

United3D: A Protein Model Quality Assessment Program That Uses Two Consensus Based Methods ⬇️

scientific article published on January 1, 2012

List of works by Mayuko Takeda-Shitaka

CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

Comprehensive analysis of the Co-structures of dipeptidyl peptidase IV and its inhibitor

Evaluation of homology modeling of the severe acute respiratory syndrome (SARS) coronavirus main protease for structure based drug design

Evaluation of the third solvent clusters fitting procedure for the prediction of protein-protein interactions based on the results at the CAPRI blind docking study

FAMSD: A powerful protein modeling platform that combines alignment methods, homology modeling, 3D structure quality estimation and molecular dynamics.

Fams-ace: a combined method to select the best model after remodeling all server models.

HUMAN FAMSD-BASE: high quality protein structure model database for the human genome using the FAMSD homology modeling method.

Identification of amino acid residues of Salmonella SlyA that are critical for transcriptional regulation

Interaction between the antigen and antibody is controlled by the constant domains: Normal mode dynamics of the HEL–HyHEL‐10 complex ⬇️

LB3D: A Protein Three-Dimensional Substructure Search Program Based on the Lower Bound of a Root Mean Square Deviation Value ⬇️

Method for predicting homology modeling accuracy from amino acid sequence alignment: the power function.

Molecular characterization of ADAMTS13 gene mutations in Japanese patients with Upshaw-Schulman syndrome ⬇️

New protein structure model evaluation methods that include a side-chain consensus score for the protein modeling.

Protein structure prediction in CASP6 using CHIMERA and FAMS.

Protein structure prediction in structure based drug design.

Quality assessment methods for 3D protein structure models based on a residue-residue distance matrix prediction.

Remarkably different structures and reaction mechanisms of ketoreductases for the opposite stereochemical control in the biosynthesis of BIQ antibiotics

Searching for protein-protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues

Topology of AspT, the aspartate:alanine antiporter of Tetragenococcus halophilus, determined by site-directed fluorescence labeling

United3D: A Protein Model Quality Assessment Program That Uses Two Consensus Based Methods ⬇️