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List of works by Hanah Margalit

A Dynamic View of Domain-Motif Interactions ⬇️

scientific article published on January 12, 2012

A Structure-Based Algorithm to Predict Potential Binding Peptides to MHC Molecules with Hydrophobic Binding Pockets ⬇️

scientific article published on November 1, 1997

A functional selection model explains evolutionary robustness despite plasticity in regulatory networks

scientific article published on January 2012

A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs

scientific article published on 21 February 2012

A novel Bayesian DNA motif comparison method for clustering and retrieval

scientific article

A role for CH…O interactions in protein-DNA recognition ⬇️

scientific article published on April 17, 1998

A survey of small RNA-encoding genes in Escherichia coli

scientific article

A wide repertoire of miRNA binding sites: prediction and functional implications ⬇️

scientific article published on September 27, 2011

Ab initio prediction of transcription factor targets using structural knowledge

scientific article

Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions

scientific article published on 28 January 2011

Assigning functions to genes: identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements

scientific article

Auxiliary tRNAs: large-scale analysis of tRNA genes reveals patterns of tRNA repertoire dynamics

scientific article

Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains

scholarly article

Characterization and prediction of protein-protein interactions within and between complexes

scholarly article

Chromosomal organization is shaped by the transcription regulatory network

scientific article

Clustering and conservation patterns of human microRNAs

scientific article

Co-evolution of transcription factors and their targets depends on mode of regulation

scientific article published on January 2006

Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids

scientific article published on 11 May 2012

Comparative functional genomics of the fission yeasts

scientific article

Competition between small RNAs: a quantitative view

scientific article published on April 2012

Conserved sequence elements associated with exon skipping

scientific article

Convergent Within-Host Adaptation of Pseudomonas aeruginosa through the Transcriptional Regulatory Network ⬇️

scientific article published on 28 March 2023

Correction: A Dynamic View of Domain-Motif Interactions.

scientific article

Cytomegalovirus microRNAs facilitate persistent virus infection in salivary glands

scientific article

Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation ⬇️

scientific article published on October 15, 2003

Evolutionary conservation of domain-domain interactions

scientific article published on January 2006

Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions

scientific article published on 27 May 2014

Global Mapping of Small RNA-Target Interactions in Bacteria

scientific article published on September 2016

Global regulation of transcription by a small RNA: a quantitative view

scientific article

Harnessing the cellular immune system to the gene-prediction cart ⬇️

scientific article published on December 1, 2001

Hierarchy of sequence-dependent features associated with prokaryotic translation

scientific article

Host immune system gene targeting by a viral miRNA

scientific article

How reliable are experimental protein-protein interaction data?

scientific article published in April 2003

Identification and characterization ofE.coliribosomal binding sites by free energy computation ⬇️

scientific article published on August 25, 1993

In vivo mapping of RNA-RNA interactions in Staphylococcus aureus using the endoribonuclease III.

scientific article

Inferring the contribution of small RNAs to changes in gene expression in response to stress

scientific article published on 04 March 2022

Insights from MHC-bound peptides.

scientific article published on January 2003

IntAct: an open source molecular interaction database

scientific article

Integration of Bacterial Small RNAs in Regulatory Networks

scientific article

Interactions between distant ceRNAs in regulatory networks

scientific article published on May 2014

Legionella pneumophila 6S RNA optimizes intracellular multiplication

scientific article

Mapping the small RNA interactome in bacteria using RIL-seq

scientific article published on 7 December 2017

Markovian domain fingerprinting: statistical segmentation of protein sequences ⬇️

scientific article published on October 1, 2001

Modularity and directionality in genetic interaction maps

scientific article

Molecular basis for expression of common and rare fragile sites

scientific article

Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction

scholarly article

Periodic variation in side-chain polarities of T-cell antigenic peptides correlates with their structure and activity ⬇️

scientific article published on August 29, 1995

Persistently conserved positions in structurally similar, sequence dissimilar proteins: Roles in preserving protein fold and function ⬇️

scientific article published on February 1, 2002

Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments.

scientific article published on 11 December 2017

Preferential use of protein domain pairs as interaction mediators: order and transitivity

scientific article published on 27 August 2010

Quantitative parameters for amino acid-base interaction: Implications for prediction of protein-DNA binding sites ⬇️

scientific article published on May 15, 1998

Reduced polymorphism in domains involved in protein-protein interactions

scientific article

Regulation of gene expression by small non-coding RNAs: a quantitative view

scientific article published on 25 September 2007

Relative predicted protein levels of functionally associated proteins are conserved across organisms

scientific article

RepTar: a database of predicted cellular targets of host and viral miRNAs

scientific article

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

scientific article

Stochastic analysis of the SOS response in Escherichia coli

scientific article

Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles

scientific article published on 27 October 2011

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