List of works - Andrej Šali

Modeller: generation and refinement of homology-based protein structure models

scientific article (publication date: 2003)

The molecular architecture of the nuclear pore complex

scientific article

Global landscape of HIV-human protein complexes

scientific article

Comparative Protein Structure Modeling Using MODELLER

scientific article published on September 8, 2014

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

scientific article published on 30 April 2020

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

journal article from 'bioRxiv' published in 2020

Determining the architectures of macromolecular assemblies

scientific article

Protein production and purification

scientific article

Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters

scientific article published in July 2014

ModLoop: automated modeling of loops in protein structures

scientific article (publication date: 12 December 2003)

FoXS: a web server for rapid computation and fitting of SAXS profiles

scientific article

Tools for comparative protein structure modeling and analysis

scientific article

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

scientific article

The molecular sociology of the cell

scientific article published on December 2007

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

scientific article

Components of coated vesicles and nuclear pore complexes share a common molecular architecture

scientific article

Outcome of the first electron microscopy validation task force meeting

scientific article (publication date: 8 February 2012)

Putting the Pieces Together: Integrative Modeling Platform Software for Structure Determination of Macromolecular Assemblies

scientific article published on January 17, 2012

Protein structure modeling with MODELLER.

scientific article

Comparative Protein Structure Modeling Using MODELLER.

scientific article published on 20 June 2016

Global Identification and Characterization of Both O-GlcNAcylation and Phosphorylation at the Murine Synapse

scientific article published on May 29, 2012

UCSF Chimera, MODELLER, and IMP: an integrated modeling system

scientific article

Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection

scientific article published on December 21, 2011

Accurate SAXS profile computation and its assessment by contrast variation experiments

scientific article published on August 2013

Simple fold composition and modular architecture of the nuclear pore complex

scholarly article

Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor

scientific article published on 13 June 2009

ModBase, a database of annotated comparative protein structure models, and associated resources

scientific article

Protein structure fitting and refinement guided by cryo-EM density

scientific article

Genomic-scale prioritization of drug targets: the TDR Targets database

scientific article

From words to literature in structural proteomics

scientific article

Statistical potentials for fold assessment

scientific article published on February 1, 2002

MODBASE, a database of annotated comparative protein structure models, and associated resources

scientific article

Study of the structural dynamics of the E coli 70S ribosome using real-space refinement

scientific article

Ligand discovery from a dopamine D3 receptor homology model and crystal structure

scientific article

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources

scientific article

MODBASE: a database of annotated comparative protein structure models and associated resources

scientific article

Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex

scientific article

Comparative protein structure modeling by iterative alignment, model building and model assessment

scientific article

Integrating diverse data for structure determination of macromolecular assemblies

scientific article

FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles

scientific article published on 05 May 2016

Biochemistry. Integrative structural biology

scientific article published on February 2013

PIBASE: a comprehensive database of structurally defined protein interfaces

scientific article published on 18 January 2005

Multiple conformations of E. coli Hsp90 in solution: insights into the conformational dynamics of Hsp90.

scientific article published on May 2008

ModBase, a database of annotated comparative protein structure models and associated resources

scientific article

Comparative Protein Structure Modeling Using MODELLER.

scientific article published in November 2016

Comprehensive Molecular Structure of the Eukaryotic Ribosome

scientific article

A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae

scientific article

Function of human Rh based on structure of RhCG at 2.1 A

scientific article

The Enzyme Function Initiative

scientific article

Crystal structure of a eukaryotic phosphate transporter

scientific article

List of works by Andrej Šali

Modeller: generation and refinement of homology-based protein structure models

The molecular architecture of the nuclear pore complex

Global landscape of HIV-human protein complexes

Comparative Protein Structure Modeling Using MODELLER

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

Determining the architectures of macromolecular assemblies

Protein production and purification

Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters

ModLoop: automated modeling of loops in protein structures

FoXS: a web server for rapid computation and fitting of SAXS profiles

Tools for comparative protein structure modeling and analysis

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

The molecular sociology of the cell

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

Components of coated vesicles and nuclear pore complexes share a common molecular architecture

Outcome of the first electron microscopy validation task force meeting

Putting the Pieces Together: Integrative Modeling Platform Software for Structure Determination of Macromolecular Assemblies

Protein structure modeling with MODELLER.

Comparative Protein Structure Modeling Using MODELLER.

Global Identification and Characterization of Both O-GlcNAcylation and Phosphorylation at the Murine Synapse

UCSF Chimera, MODELLER, and IMP: an integrated modeling system

Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection

Accurate SAXS profile computation and its assessment by contrast variation experiments

Simple fold composition and modular architecture of the nuclear pore complex

Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor

ModBase, a database of annotated comparative protein structure models, and associated resources

Protein structure fitting and refinement guided by cryo-EM density

Genomic-scale prioritization of drug targets: the TDR Targets database

From words to literature in structural proteomics

Statistical potentials for fold assessment

MODBASE, a database of annotated comparative protein structure models, and associated resources

Study of the structural dynamics of the E coli 70S ribosome using real-space refinement

Ligand discovery from a dopamine D3 receptor homology model and crystal structure

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources

MODBASE: a database of annotated comparative protein structure models and associated resources

Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex

Comparative protein structure modeling by iterative alignment, model building and model assessment

Integrating diverse data for structure determination of macromolecular assemblies

FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles

Biochemistry. Integrative structural biology

PIBASE: a comprehensive database of structurally defined protein interfaces

Multiple conformations of E. coli Hsp90 in solution: insights into the conformational dynamics of Hsp90.

ModBase, a database of annotated comparative protein structure models and associated resources

Comparative Protein Structure Modeling Using MODELLER.

Comprehensive Molecular Structure of the Eukaryotic Ribosome

A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae

Function of human Rh based on structure of RhCG at 2.1 A

The Enzyme Function Initiative

Crystal structure of a eukaryotic phosphate transporter