List of works - Roger Pique-Regi

A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data

scientific article

A high-throughput RNA-seq approach to profile transcriptional responses

scientific article published on 29 October 2015

A hypermorphic antioxidant response element is associated with increased MS4A6A expression and Alzheimer's disease

scientific article published on 27 October 2017

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

scientific article

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

scientific article

Bayesian Multi-SNP Genetic Association Analysis: Control of FDR and Use of Summary Statistics

Bayesian detection of recurrent copy number alterations across multiple array samples

Bayesian hierarchical modeling of means and covariances of gene expression data within families

scientific article

Bioinformatics for copy number variation data

scientific article

Clinical significance of tumor-associated inflammatory cells in metastatic neuroblastoma

scientific article published on 27 August 2012

Copy number variation in the Framingham Heart Study

scientific article

Copy number variation signature to predict human ancestry

scientific article

Cross-population joint analysis of eQTLs: fine mapping and functional annotation

scientific article published on 23 April 2015

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

scientific article

DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina

scientific journal article

DNase I sensitivity QTLs are a major determinant of human expression variation

scientific article

Detecting Changes in DNA Copy Number: Reviewing signal processing techniques

scholarly article by Roger Pique-Regi et al published January 2012 in IEEE: Signal Processing Magazine

Differentially expressed gene networks, biomarkers, long noncoding RNAs, and shared responses with cocaine identified in the midbrains of human opioid abusers

scientific article published in Scientific Reports

Dissecting the regulatory architecture of gene expression QTLs

scientific article published on 31 January 2012

Does the human placenta express the canonical cell entry mediators for SARS-CoV-2?

scientific article published on 19 May 2020

Does the human placenta express the canonical cell entry mediators for SARS-CoV-2?

scientific article published on 14 July 2020

Efficient Integrative Multi-SNP Association Analysis via Deterministic Approximation of Posteriors

scientific article published on 26 May 2016

Environmental perturbations lead to extensive directional shifts in RNA processing

scientific article published on 12 October 2017

Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions

scientific article published on 14 May 2021

Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens

scientific article

High-throughput allele-specific expression across 250 environmental conditions

scientific article published on 19 October 2016

Identification of Splicing Quantitative Trait Loci (sQTL) in Drosophila melanogaster with Developmental Lead (Pb2+) Exposure

scientific article published on 24 October 2017

Integrating molecular QTL data into genome-wide genetic association analysis: Probabilistic assessment of enrichment and colocalization

scientific article

Joint estimation of copy number variation and reference intensities on multiple DNA arrays using GADA.

scientific article published on 10 March 2009

Microarray classification using block diagonal linear discriminant analysis with embedded feature selection

Model selection and Bayesian methods in statistical genetics: summary of group 11 contributions to Genetic Analysis Workshop 15.

scientific article published on January 2007

Nuclease Footprints in Sperm Project Past and Future Chromatin Regulatory Events.

scientific article published on 17 May 2016

Prognostic significance of gene expression profiles of metastatic neuroblastomas lacking MYCN gene amplification

scientific article published in September 2006

QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays

scientific article published on 22 September 2017

QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays

QuASAR: quantitative allele-specific analysis of reads

scientific article

R-Gada: a fast and flexible pipeline for copy number analysis in association studies

scientific article

RNA-sequencing Identifies Novel Pathways in Sarcoidosis Monocytes

scientific article

Sequential Diagonal Linear Discriminant Analysis (SeqDLDA) for Microarray Classification and Gene Identification

article

Single cell functional genomics reveals plasticity of subcutaneous white adipose tissue (WAT) during early postnatal development

scientific article published on 21 July 2021

Single cell transcriptional signatures of the human placenta in term and preterm parturition

scientific article published on 12 December 2019

Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques

article

Sparse representation and Bayesian detection of genome copy number alterations from microarray data

scientific article

Treelets as feature transformation tool for block diagonal linear discrimination

Wavelet Footprints and Sparse Bayesian Learning for DNA Copy Number Change Analysis

Which Genetics Variants in DNase-Seq Footprints Are More Likely to Alter Binding?

scientific article

List of works by Roger Pique-Regi

A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data

A high-throughput RNA-seq approach to profile transcriptional responses

A hypermorphic antioxidant response element is associated with increased MS4A6A expression and Alzheimer's disease

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

Bayesian Multi-SNP Genetic Association Analysis: Control of FDR and Use of Summary Statistics

Bayesian detection of recurrent copy number alterations across multiple array samples

Bayesian hierarchical modeling of means and covariances of gene expression data within families

Bioinformatics for copy number variation data

Clinical significance of tumor-associated inflammatory cells in metastatic neuroblastoma

Copy number variation in the Framingham Heart Study

Copy number variation signature to predict human ancestry

Cross-population joint analysis of eQTLs: fine mapping and functional annotation

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina

DNase I sensitivity QTLs are a major determinant of human expression variation

Detecting Changes in DNA Copy Number: Reviewing signal processing techniques

Differentially expressed gene networks, biomarkers, long noncoding RNAs, and shared responses with cocaine identified in the midbrains of human opioid abusers

Dissecting the regulatory architecture of gene expression QTLs

Does the human placenta express the canonical cell entry mediators for SARS-CoV-2?

Does the human placenta express the canonical cell entry mediators for SARS-CoV-2?

Efficient Integrative Multi-SNP Association Analysis via Deterministic Approximation of Posteriors

Environmental perturbations lead to extensive directional shifts in RNA processing

Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions

Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens

High-throughput allele-specific expression across 250 environmental conditions

Identification of Splicing Quantitative Trait Loci (sQTL) in Drosophila melanogaster with Developmental Lead (Pb2+) Exposure

Integrating molecular QTL data into genome-wide genetic association analysis: Probabilistic assessment of enrichment and colocalization

Joint estimation of copy number variation and reference intensities on multiple DNA arrays using GADA.

Microarray classification using block diagonal linear discriminant analysis with embedded feature selection

Model selection and Bayesian methods in statistical genetics: summary of group 11 contributions to Genetic Analysis Workshop 15.

Nuclease Footprints in Sperm Project Past and Future Chromatin Regulatory Events.

Prognostic significance of gene expression profiles of metastatic neuroblastomas lacking MYCN gene amplification

QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays

QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays

QuASAR: quantitative allele-specific analysis of reads

R-Gada: a fast and flexible pipeline for copy number analysis in association studies

RNA-sequencing Identifies Novel Pathways in Sarcoidosis Monocytes

Sequential Diagonal Linear Discriminant Analysis (SeqDLDA) for Microarray Classification and Gene Identification

Single cell functional genomics reveals plasticity of subcutaneous white adipose tissue (WAT) during early postnatal development

Single cell transcriptional signatures of the human placenta in term and preterm parturition

Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques

Sparse representation and Bayesian detection of genome copy number alterations from microarray data

Treelets as feature transformation tool for block diagonal linear discrimination

Wavelet Footprints and Sparse Bayesian Learning for DNA Copy Number Change Analysis

Which Genetics Variants in DNase-Seq Footprints Are More Likely to Alter Binding?

circuitSNPs: Predicting genetic effects using a Neural Network to model regulatory modules of DNase-seq footprints