List of works by Rory Johnson

A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies

scientific article

A genome-wide screen for genetic variants that modify the recruitment of REST to its target genes

scientific article

A microRNA-based gene dysregulation pathway in Huntington's disease

scientific article

Activation of the intrinsic fibroinflammatory program in adult pancreatic acinar cells triggered by Hippo signaling disruption

scientific article published on 12 September 2019

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

scientific article published on 05 February 2020

Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs

scientific article published on 26 December 2018

CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis.

scientific article published on 27 September 2015

CASPR, an analysis pipeline for single and paired guide RNA CRISPR screens, reveals optimal target selection for long non-coding RNAs

scientific article published on 01 March 2020

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

scientific article published on 05 February 2020

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts

scientific article

Coassembly of REST and its cofactors at sites of gene repression in embryonic stem cells.

scientific article

Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells

scientific article published on 18 April 2016

DECKO: Single-oligo, dual-CRISPR deletion of genomic elements including long non-coding RNAs

scientific article published on 23 October 2015

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

scientific article

Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features

scientific article published on 27 January 2017

Distinct profiles of REST interactions with its target genes at different stages of neuronal development

scientific article

Enhancing CRISPR deletion via pharmacological delay of DNA-PKcs

scientific article published on 11 February 2021

Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization

scientific article

Functional importance of cardiac enhancer-associated noncoding RNAs in heart development and disease

scientific article published on 19 August 2014

GENCODE reference annotation for the human and mouse genomes

scientific article published on 01 January 2019

Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs

scientific article

Global Positioning System: Understanding Long Noncoding RNAs through Subcellular Localization

scientific article published on 01 March 2019

Hacking the Cancer Genome: Profiling Therapeutically Actionable Long Non-coding RNAs Using CRISPR-Cas9 Screening

scientific article published on 28 February 2019

High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing

scientific article

Human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease

scientific article

Human genomics. The human transcriptome across tissues and individuals

scientific article

Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.

scientific article published on 23 December 2011

Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication ⬇️

scientific article published on 09 August 2006

LnCompare: gene set feature analysis for human long non-coding RNAs

scientific article published on 01 July 2019

LncATLAS database for subcellular localization of long noncoding RNAs

scientific article published on 06 April 2017

MacroRNA underdogs in a microRNA world: evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA.

scientific article published on September 2010

Neurodegeneration as an RNA disorder

scientific article published on 10 October 2012

New insights into non-coding RNA networks in Huntington's disease

scientific article

PPARδ Interacts with the Hippo Coactivator YAP1 to Promote SOX9 Expression and Gastric Cancer Progression

scientific article published on 03 December 2019

Peritumoral activation of the Hippo pathway effectors YAP and TAZ suppresses liver cancer in mice

scientific article published on 01 November 2019

Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion

scientific article

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

scientific article

The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter"

scientific article published in 2011

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

scientific article

The role of REST in transcriptional and epigenetic dysregulation in Huntington's disease

scientific article published on 17 February 2010

Towards a complete map of the human long non-coding RNA transcriptome

scientific article published on 01 September 2018

Transcriptional dysregulation of coding and non-coding genes in cellular models of Huntington's disease

scientific article published on December 2009

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

scientific article

Paulina is supported by:

About Paulina

Help