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List of works by Marc Modat

A Bayesian Approach for Spatially Adaptive Regularisation in Non-rigid Registration

article

A Survey of Methods for 3D Histology Reconstruction.

scientific article published on 21 February 2018

A cognitive chameleon: lessons from a novel MAPT mutation case.

scientific article

A comparison of voxel and surface based cortical thickness estimation methods

scientific article

A framework for using diffusion weighted imaging to improve cortical parcellation

scientific article published on 01 January 2010

A generalized framework unifying image registration and respiratory motion models and incorporating image reconstruction, for partial image data or full images

scientific article

A magnetic resonance multi-atlas for the neonatal rabbit brain

scientific article published on 14 June 2018

A method for rapid production of subject specific finite element meshes for electrical impedance tomography of the human head

scientific article published on 24 April 2012

A multi-channel uncertainty-aware multi-resolution network for MR to CT synthesis

scientific article

A nonlinear biomechanical model based registration method for aligning prone and supine MR breast images.

scientific article published in March 2014

A novel use of arterial spin labelling MRI to demonstrate focal hypoperfusion in individuals with posterior cortical atrophy: a multimodal imaging study

scientific article published on 5 January 2016

A parallel-friendly normalized mutual information gradient for free-form registration

article published in 2009

A population-based study of head injury, cognitive function and pathological markers

scientific article

A symmetric block-matching framework for global registration

Acceleration of hippocampal atrophy rates in asymptomatic amyloidosis

scientific article published on 22 October 2015

Accessible data curation and analytics for international-scale citizen science datasets

scientific article published on 22 November 2021

Accurate Small Deformation Exponential Approximant to Integrate Large Velocity Fields: Application to Image Registration

scientific article published in June 2016

Accurate localization of optic radiation during neurosurgery in an interventional MRI suite

scientific article published on 20 December 2011

Accurate multimodal probabilistic prediction of conversion to Alzheimer's disease in patients with mild cognitive impairment

scientific article published on 19 May 2013

AdaPT: An adaptive preterm segmentation algorithm for neonatal brain MRI.

scientific article

Adaptive neonate brain segmentation

scientific article published on 01 January 2011

An event-based disease progression model and its application to familial Alzheimer's disease

scientific article published in January 2011

An event-based model for disease progression and its application in familial Alzheimer's disease and Huntington's disease

scientific article

An unbiased longitudinal analysis framework for tracking white matter changes using diffusion tensor imaging with application to Alzheimer's disease

scientific article published on 28 January 2013

Anosmia and other SARS-CoV-2 positive test-associated symptoms, across three national, digital surveillance platforms as the COVID-19 pandemic and response unfolded: an observation study

scientific article published on 16 December 2020

Anosmia, ageusia, and other COVID-19-like symptoms in association with a positive SARS-CoV-2 test, across six national digital surveillance platforms: an observational study

scientific article

Anxiety and depression symptoms after COVID-19 infection: results from the COVID Symptom Study app

scientific article

ApoE influences regional white-matter axonal density loss in Alzheimer's disease

scientific article published on 3 May 2017

Appearance modeling of 11C PiB PET images: characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairment and healthy aging.

scientific article

Are early atrophy patterns in autosomal dominant familial Alzheimer's disease gene-dependent?

article

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge

scientific article published on 11 August 2015

Associations Between Vascular Risk Across Adulthood and Brain Pathology in Late Life: Evidence From a British Birth Cohort

scientific article published on 04 November 2019

Associations between blood pressure across adulthood and late-life brain structure and pathology in the neuroscience substudy of the 1946 British birth cohort (Insight 46): an epidemiological study

scientific article published on 20 August 2019

Atrophy patterns in Alzheimer's disease and semantic dementia: a comparison of FreeSurfer and manual volumetric measurements.

scientific article published on 27 October 2009

Atrophy rates in asymptomatic amyloidosis: implications for Alzheimer prevention trials

scientific article

Attenuation Correction Synthesis for Hybrid PET-MR Scanners

scientific article published on 01 January 2013

Attenuation correction synthesis for hybrid PET-MR scanners: application to brain studies.

scientific article published on 17 July 2014

Attributes and predictors of Long-COVID: analysis of COVID cases and their symptoms collected by the Covid Symptoms Study App ⬇️

report published in 2020

Attributes and predictors of Long-COVID: analysis of COVID cases and their symptoms collected by the Covid Symptoms Study App

scientific article

Attributes and predictors of long COVID

Author Correction: Attributes and predictors of long COVID

correction of a scholarly article

Automated brain extraction using Multi-Atlas Propagation and Segmentation (MAPS)

Automated postoperative muscle assessment of hip arthroplasty patients using multimodal imaging joint segmentation

scientific article published on 03 September 2019

Automatic structural parcellation of mouse brain MRI using multi-atlas label fusion

scientific article published on 27 January 2014

Basal forebrain atrophy in frontotemporal dementia

scientific article published on 13 February 2020

Bilateral Weighted Adaptive Local Similarity Measure for Registration in Neurosurgery

Brain MAPS: an automated, accurate and robust brain extraction technique using a template library

scientific article

Brain and hippocampal rates of atrophy in familial Alzheimer's disease mutation carriers: Preliminary findings from the DIAN study

Brain volume estimation from post-mortem newborn and fetal MRI

scientific article

CT synthesis in the head & neck region for PET/MR attenuation correction: an iterative multi-atlas approach

scientific article published on December 2015

Changes in symptomatology, re-infection and transmissibility associated with SARS-CoV-2 variant B.1.1.7: an ecological study

Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study

scientific article

Classification of Alzheimer's disease patients and controls with Gaussian processes

scientific article published in May 2012

Comparison of In Vivo and Ex Vivo MRI for the Detection of Structural Abnormalities in a Mouse Model of Tauopathy

scientific article published on 31 March 2017

Comparison of Multi-class Machine Learning Methods for the Identification of Factors Most Predictive of Prognosis in Neurobehavioral assessment of Pediatric Severe Disorder of Consciousness through LOCFAS scale

scientific article published on 01 July 2019

Computational modelling of pathogenic protein spread in neurodegenerative diseases

scientific article

Consensus between pipelines in structural brain networks.

scientific article

Cortical folding analysis on patients with Alzheimer's disease and mild cognitive impairment

article

Cortical microstructure in young onset Alzheimer's disease using neurite orientation dispersion and density imaging

scientific article published on 25 March 2018

Cross-sectional analysis using voxel or surface based cortical thickness methods: A comparison study

Cross-sectional cerebral volumetric differences and associations with estimated time to age-at-onset in familial Alzheimer's disease: Findings from the DIAN study

article

CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation

scientific article published in 2023

Current smoking and COVID-19 risk: results from a population symptom app in over 2.4 million people

scientific article published on 05 January 2021

Current tobacco smoking and risk from COVID-19: results from a population symptom app in over 2.4 million people

scientific article published on 21 May 2020

Deep Boosted Regression for MR to CT Synthesis

scientific article

Detailed volumetric analysis of the hypothalamus in behavioral variant frontotemporal dementia

scientific article

Detecting COVID-19 infection hotspots in England using large-scale self-reported data from a mobile application

scientific article published on 27 October 2020

Detecting COVID-19 infection hotspots in England using large-scale self-reported data from a mobile application: a prospective, observational study

scientific article published on 03 December 2020

Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images

Disentangling post-vaccination symptoms from early COVID-19

scientific article

Distinct profiles of brain atrophy in frontotemporal lobar degeneration caused by progranulin and tau mutations

scientific article

Erratum to: Establishment of an open database of realistic simulated data for evaluation of partial volume correction techniques in brain PET/MR.

scientific article published on December 2015

Establishing spatial correspondence between the inner colon surfaces from prone and supine CT colonography

scientific article published on 01 January 2010

Establishment of an open database of realistic simulated data for evaluation of partial volume correction techniques in brain PET/MR.

scientific article

Evaluation of MRI to Ultrasound Registration Methods for Brain Shift Correction: The CuRIOUS2018 Challenge

scientific article published on 13 August 2019

Evaluation of Six Registration Methods for the Human Abdomen on Clinically Acquired CT

scientific article published on June 2016

Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge

scientific article

Fast free-form deformation using graphics processing units

scientific article published on 8 October 2009

Feasibility Randomized Trial for an Intensive Memory-Focused Training Program for School-Aged Children with Acquired Brain Injury

scientific article published on 07 July 2020

Federated learning enables big data for rare cancer boundary detection

Forward-backward splitting in deformable image registration: A demons approach

Fully-Automated μMRI Morphometric Phenotyping of the Tc1 Mouse Model of Down Syndrome.

scientific article

GAS: A genetic atlas selection strategy in multi-atlas segmentation framework

scientific article published on 19 November 2018

Geodesic Information Flows: Spatially-Variant Graphs and Their Application to Segmentation and Fusion

scientific article published on 14 April 2015

Geodesic information flows

scientific article published on 01 January 2012

Geodesic shape-based averaging

scientific article published on 01 January 2012

Global image registration using a symmetric block-matching approach

scientific article published on July 2014

Grey Matter Sublayer Thickness Estimation in the Mouse Cerebellum

article by Ma Da et al published 2015 in Lecture Notes in Computer Science

Hippocampal Subfield Volumetry: Differential Pattern of Atrophy in Different Forms of Genetic Frontotemporal Dementia.

scientific article

Hippocampal subfield volumes and pre-clinical Alzheimer's disease in 408 cognitively normal adults born in 1946

scientific article published on 17 October 2019

Identification of optimal symptom combinations to trigger diagnostic work-up of suspected COVID-19 cases: analysis from a community-based, prospective, observational cohort

scientific article published on 01 December 2020

Illness duration and symptom profile in a large cohort of symptomatic UK school-aged children tested for SARS-CoV-2

scientific article

Imaging the accumulation and suppression of tau pathology using multiparametric MRI.

scientific article published on 15 December 2015

Immediate ROI Search for 3-D Medical Images

scholarly article by Karen Simonyan et al published 2013 in Lecture Notes in Computer Science

Improved Maximum a Posteriori Cortical Segmentation by Iterative Relaxation of Priors

scientific article published on 01 January 2009

Improved Neuronavigation through Integration of Intraoperative Anatomical and Diffusion Images in an Interventional MRI Suite

Improving 3D medical image registration CUDA software with genetic programming

article

Integrating structural and diffusion MR information for optic radiation localisation in focal epilepsy patients

Inverse-Consistent Symmetric Free Form Deformation

article published in 2012

Investigating the relationship between BMI across adulthood and late life brain pathologies

scientific article

Issues in quantification of registered respiratory gated PET/CT in the lung

scientific article published on 20 October 2017

Iterative framework for the joint segmentation and CT synthesis of MR images: application to MRI-only radiotherapy treatment planning

scientific article

Joint Multimodal Segmentation of Clinical CT and MR from Hip Arthroplasty Patients

Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections

Key predictors of attending hospital with COVID19: An association study from the COVID Symptom Tracker App in 2,618,948 individuals

scientific article published on 29 April 2020

Knowledge barriers in the symptomatic-COVID-19 testing programme in the UK: an observational study

scientific article

LONGITUDINAL ATROPHY IN AUTOSOMAL DOMINANT AD AND SPORADIC AD: LESSONS FROM DIAN

Label-driven weakly-supervised learning for multimodal deformarle image registration

Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning

Lesion-wise evaluation for effective performance monitoring of small object segmentation

scientific article

LoAd: a locally adaptive cortical segmentation algorithm

scientific article published on 23 February 2011

Locally weighted Markov random fields for cortical segmentation

Log-Euclidean free-form deformation

scientific article published on 3 March 2011

Longitudinal cortical thickness estimation using Khalimsky's cubic complex ⬇️

scientific article published on 01 January 2011

Longitudinal in vivo MRI in a Huntington's disease mouse model: Global atrophy in the absence of white matter microstructural damage

scientific article

Longitudinal measurement of the developing grey matter in preterm subjects using multi-modal MRI.

scientific article published on 12 February 2015

Longitudinal measurement of the developing thalamus in the preterm brain using multi-modal MRI

scientific article published on 01 January 2014

Longitudinal neuroanatomical and cognitive progression of posterior cortical atrophy

scientific article published on 01 July 2019

Magnetic resonance imaging evidence for presymptomatic change in thalamus and caudate in familial Alzheimer's disease

scientific article published on 28 March 2013

Magnetic resonance imaging in Alzheimer's Disease Neuroimaging Initiative 2

scientific article

Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping

scientific article

Measuring brain atrophy with a generalized formulation of the boundary shift integral

scientific article

Measuring cortical mean diffusivity to assess early microstructural cortical change in presymptomatic familial Alzheimer's disease

scientific article published on 17 September 2020

Multi-STEPS: Multi-label similarity and truth estimation for propagated segmentations

Multi-channel registration of fractional anisotropy and T1-weighted images in the presence of atrophy: application to multiple sclerosis

scientific article published on October 2015

Multi-contrast attenuation map synthesis for PET/MR scanners: assessment on FDG and Florbetapir PET tracers

scientific article published on 24 June 2015

Multi-scale analysis of imaging features and its use in the study of COPD exacerbation susceptible phenotypes

scientific article published on 01 January 2014

Multimodal Image Analysis in Alzheimer's Disease via Statistical Modelling of Non-local Intensity Correlations

scientific article published on 11 April 2016

NiftyNet: a deep-learning platform for medical imaging.

scientific article published on 31 January 2018

NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics

scientific article

Nonlinear Elastic Spline Registration: Evaluation with Longitudinal Huntington’s Disease Data

article

Nonrigid registration with differential bias correction using normalised mutual information

article

On the extraction of topologically correct thickness measurements using Khalimsky's cubic complex

scientific article

Optic radiation tractography and vision in anterior temporal lobe resection

scientific article published on March 2012

Parametric non-rigid registration using a stationary velocity field

scientific article published in January 2012

Patterns of progressive atrophy vary with age in Alzheimer's disease patients.

scientific article published on 14 November 2017

Post-vaccination SARS-CoV-2 infection: risk factors and illness profile in a prospective, observational community-based case-control study

scientific article

Presymptomatic atrophy in autosomal dominant Alzheimer's disease: A serial MRI study.

scientific article published on 21 July 2017

Presymptomatic cortical thinning in familial Alzheimer disease: A longitudinal MRI study.

scientific article published on 12 October 2016

Presymptomatic white matter integrity loss in familial frontotemporal dementia in the GENFI cohort: A cross-sectional diffusion tensor imaging study

scientific article published on 11 July 2018

Preventing visual field deficits from neurosurgery

scientific article

Prion disease diagnosis using subject-specific imaging biomarkers within a multi-kernel Gaussian process

scientific article published on 25 October 2019

Probable delirium is a presenting symptom of COVID-19 in frail, older adults: a cohort study of 322 hospitalised and 535 community-based older adults

scientific article published on 28 September 2020

Putaminal diffusion tensor imaging measures predict disease severity across human prion diseases

scientific article published on 08 April 2020

Quantitative Airway Analysis in Longitudinal Studies Using Groupwise Registration and 4D Optimal Surfaces

Rates of brain and hippocampal atrophy in presymptomatic familial Alzheimer's disease: Acceleration and mutation effects

Rates of brain and hippocampal atrophy in presymptomatic familial Alzheimer's disease: Acceleration and mutation effects

Reduced cortical thickness in the posterior cingulate gyrus is characteristic of both typical and atypical Alzheimer's disease

scientific article published in January 2010

Registration of MRI and iUS Data to Compensate Brain Shift Using a Symmetric Block-Matching Based Approach

article published in 2018

Registration of the endoluminal surfaces of the colon derived from prone and supine CT colonography.

scientific article published in June 2011

Risk factors and disease profile of post-vaccination SARS-CoV-2 infection in UK users of the COVID Symptom Study app: a prospective, community-based, nested, case-control study

scientific article published in January 2022

Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas

scientific article published in 2022

Robust parametric modeling of Alzheimer's disease progression

scientific article published on 16 October 2020

SARS-CoV-2 (COVID-19) infection in pregnant women: characterization of symptoms and syndromes predictive of disease and severity through real-time, remote participatory epidemiology

scientific article published on 19 August 2020

STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation

scientific article

Scale Factor Point Spread Function Matching: Beyond Aliasing in Image Resampling

Segmentation propagation using a 3D embryo atlas for high-throughput MRI phenotyping: comparison and validation with manual segmentation

scientific article published on 3 May 2012

Simulating Neurodegeneration through Longitudinal Population Analysis of Structural and Diffusion Weighted MRI Data

article

Spatio-Temporal Shape Analysis of Cross-Sectional Data for Detection of Early Changes in Neurodegenerative Disease

scientific article published in 2016

Spatiotemporal analysis for detection of pre-symptomatic shape changes in neurodegenerative diseases: Initial application to the GENFI cohort

Spatiotemporal analysis for detection of pre-symptomatic shape changes in neurodegenerative diseases: applied to GENFI study

Study protocol: Insight 46 - a neuroscience sub-study of the MRC National Survey of Health and Development

scientific article

Study the Longitudinal and Cross-Sectional Brain Volume Difference for Disease Progression and Treatment Effect on Mouse Model of Tauopathy Using Automated MRI Structural Parcellation

scientific article published on 24 January 2019

Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellum of the Tc1 mouse model of Down Syndrome - a comprehensive morphometric analysis with active staining contrast-enhanced MRI

scientific article published on 21 August 2020

Susceptibility artefact correction by combining B0 field maps and non-rigid registration using graph cuts

Susceptibility artefact correction using dynamic graph cuts: application to neurosurgery.

scientific article

Symptom clusters in COVID-19: A potential clinical prediction tool from the COVID Symptom Study app

scientific article

Symptom clusters in Covid19: A potential clinical prediction tool from the COVID Symptom study app

scientific article

Symptoms and syndromes associated with SARS-CoV-2 infection and severity in pregnant women from two community cohorts

scientific article

Template-Based Multimodal Joint Generative Model of Brain Data

scientific article

Template-Free Estimation of Intracranial Volume: A Preterm Birth Animal Model Study

Thalamic atrophy in frontotemporal dementia - Not just a C9orf72 problem.

scientific article

The habenula: an under-recognised area of importance in frontotemporal dementia?

scientific article

The importance of appropriate partial volume correction for PET quantification in Alzheimer's disease.

scientific article

The importance of group-wise registration in tract based spatial statistics study of neurodegeneration: a simulation study in Alzheimer's disease

scientific article

Toward adaptive radiotherapy for head and neck patients: Feasibility study on using CT-to-CBCT deformable registration for "dose of the day" calculations.

scientific article published in March 2014

Toward adaptive radiotherapy for head and neck patients: Uncertainties in dose warping due to the choice of deformable registration algorithm

scientific article published on February 2015

Toward semi-automatic biologically effective dose treatment plan optimisation for Gamma Knife radiosurgery

scientific article published on 17 October 2022

Training recurrent neural networks robust to incomplete data: Application to Alzheimer's disease progression modeling

scientific article published on 12 January 2019

Uncertainty-Aware Multi-resolution Whole-Body MR to CT Synthesis

scientific article

Using florbetapir positron emission tomography to explore cerebrospinal fluid cut points and gray zones in small sample sizes

scientific article

Using manifold learning for atlas selection in multi-atlas segmentation

scientific article

Vaccine side-effects and SARS-CoV-2 infection after vaccination in users of the COVID Symptom Study app in the UK: a prospective observational study

scientific article

Validation of clinical acceptability of an atlas-based segmentation algorithm for the delineation of organs at risk in head and neck cancer

scientific article

Weakly-supervised convolutional neural networks for multimodal image registration

scholarly article by Yipeng Hu et al published October 2018 in Medical Image Analysis

aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data.

scientific article

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