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List of works by James Berkley

"You cannot know if it's a baby or not a baby": uptake, provision and perceptions of antenatal care and routine antenatal ultrasound scanning in rural Kenya

scientific article published on 29 May 2015

A Mal functional variant is associated with protection against invasive pneumococcal disease, bacteremia, malaria and tuberculosis

scientific journal article

A growth reference for mid upper arm circumference for age among school age children and adolescents, and validation for mortality: growth curve construction and longitudinal cohort study

scientific article published on 03 August 2017

A mixed method multi-country assessment of barriers to implementing pediatric inpatient care guidelines

scientific article published on 25 March 2019

A reduced-carbohydrate and lactose-free formulation for stabilization among hospitalized children with severe acute malnutrition: A double-blind, randomized controlled trial

scientific article published on 26 February 2019

Acute bacterial meningitis in children admitted to a rural Kenyan hospital: increasing antibiotic resistance and outcome

scientific article published on November 2002

Acute seizures attributable to falciparum malaria in an endemic area on the Kenyan coast ⬇️

scientific article

Age patterns of severe paediatric malaria and their relationship to Plasmodium falciparum transmission intensity

scientific article published on 07 January 2009

Age, Spatial, and Temporal Variations in Hospital Admissions with Malaria in Kilifi County, Kenya: A 25-Year Longitudinal Observational Study

scientific article (publication date: June 2016)

Airway response to respiratory syncytial virus has incidental antibacterial effects

scientific article published on 17 May 2019

Albendazole treatment of HIV-1 and helminth co-infection: a randomized, double-blind, placebo-controlled trial

scientific article published on August 2008

Altered Memory T-Cell Responses to Bacillus Calmette-Guerin and Tetanus Toxoid Vaccination and Altered Cytokine Responses to Polyclonal Stimulation in HIV-Exposed Uninfected Kenyan Infants

scientific article published on 16 November 2015

An evolving perspective about the origins of childhood undernutrition and nutritional interventions that includes the gut microbiome

scientific article

An increase in the burden of neonatal admissions to a rural district hospital in Kenya over 19 years

scientific article

Are diagnostic criteria for acute malnutrition affected by hydration status in hospitalized children? A repeated measures study

scientific article

Arginine depletion increases susceptibility to serious infections in preterm newborns

scientific article

Assessing comorbidity and correlates of wasting and stunting among children in Somalia using cross-sectional household surveys: 2007 to 2010

scientific article

Assessment of severe malnutrition among hospitalized children in rural Kenya: comparison of weight for height and mid upper arm circumference

scientific article

Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics

scientific article published on 27 May 2019

Audit of outcomes of early initiation of antiretroviral therapy in children admitted to the paediatric wards at Kilifi district hospital, Kenya

scholarly article by HM Nabwera et al published 2010 in Journal of the International AIDS Society

Author Correction: Airway response to respiratory syncytial virus has incidental antibacterial effects

scientific article published on 18 July 2019

Author Correction: Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics

scientific article published on 1 August 2019

Bacteraemia complicating severe malaria in children

scientific article published in May 1999

Bacteraemia in Kenyan children with sickle-cell anaemia: a retrospective cohort and case-control study

scientific article published on 09 September 2009

Bacteremia among children admitted to a rural hospital in Kenya

scientific article published in January 2005

Balancing omega-6 and omega-3 fatty acids in ready-to-use therapeutic foods (RUTF).

scientific article

Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition

scientific article published on 12 April 2019

Blood transfusion for severe anaemia in children in a Kenyan hospital

scientific article published in February 2002

Burden, features, and outcome of neurological involvement in acute falciparum malaria in Kenyan children

scientific article published on May 2007

CISH and susceptibility to infectious diseases

scientific article

Capsular Typing Method for Streptococcus agalactiae Using Whole-Genome Sequence Data

scientific article

Carbohydrate malabsorption in acutely malnourished children and infants: a systematic review

scientific article

Case management of HIV-infected severely malnourished children: challenges in the area of highest prevalence

scientific article published on April 2008

Cerebral malaria versus bacterial meningitis in children with impaired consciousness.

scientific article

Cerebrospinal Fluid Studies in Kenyan Children with Severe Falciparum Malaria

scientific article

Cerebrospinal fluid markers to distinguish bacterial meningitis from cerebral malaria in children.

scientific article published on 26 September 2017

Characterisation of metabolic acidosis in Kenyan children admitted to hospital for acute non-surgical conditions

scientific article published on 27 October 2005

Childhood malnutrition: toward an understanding of infections, inflammation, and antimicrobials

scientific article

Children with severe malnutrition: can those at highest risk of death be identified with the WHO protocol?

scientific article

Clinical considerations for antibiotic choices in the treatment of severe malaria

scientific article published on 26 June 2010

Clinical features to distinguish meningitis among young infants at a rural Kenyan hospital

scientific article published on 20 August 2020

Clinical indicators of bacterial meningitis among neonates and young infants in rural Kenya

scientific article published on November 2011

Common NFKBIL2 polymorphisms and susceptibility to pneumococcal disease: a genetic association study

scientific article

Comparison of Recommendations in Clinical Practice Guidelines for Acute Gastroenteritis in Children.

scientific article published on 29 January 2016

Competing risk survival analysis of time to in-hospital death or discharge in a large urban neonatal unit in Kenya

scientific article published on 17 June 2019

Congenital and neonatal malaria in a rural Kenyan district hospital: an eight-year analysis

scientific article

Congenital microcephaly unrelated to flavivirus exposure in coastal Kenya

scientific article published on 15 November 2019

Control of Viremia Enables Acquisition of Resting Memory B Cells with Age and Normalization of Activated B Cell Phenotypes in HIV-Infected Children

scientific article published on 26 June 2015

Cost and cost-effectiveness analysis of treatment for child undernutrition in low- and middle-income countries: A systematic review

scientific article published on 03 April 2020

Cytomegalovirus viraemia is associated with poor growth and T-cell activation with an increased burden in HIV-exposed uninfected infants

scientific article published on 12 June 2017

Decreasing prevalence of antimicrobial resistance in non-typhoidal Salmonella isolated from children with bacteraemia in a rural district hospital, Kenya

scientific article published on 14 August 2006

Defining childhood severe falciparum malaria for intervention studies

scientific article

Diagnosis of acute bacterial meningitis in children at a district hospital in sub-Saharan Africa.

scientific article published in June 2001

Diagnostic performance of visible severe wasting for identifying severe acute malnutrition in children admitted to hospital in Kenya

scientific article published on 19 October 2011

Diarrhoea complicating severe acute malnutrition in Kenyan children: a prospective descriptive study of risk factors and outcome

scientific article

Discovery and validation of biomarkers to guide clinical management of pneumonia in African children

scientific article

Dynamics and constraints of early infant diagnosis of HIV infection in Rural Kenya

scientific article published on January 2012

Early loss to follow-up of recently diagnosed HIV-infected adults from routine pre-ART care in a rural district hospital in Kenya: a cohort study

scientific article

Effect of HIV infection on the acute antibody response to malaria antigens in children: an observational study

scientific article

Effect of ready-to-use supplementary food on mortality in severely immunocompromised HIV-infected individuals in Africa initiating antiretroviral therapy (REALITY): an open-label, parallel-group, randomised controlled trial

scientific article published on 10 April 2018

Embedding surveillance into clinical care to detect serious adverse events in pregnancy

scientific article published on 5 August 2015

Emergency triage assessment for hypoxaemia in neonates and young children in a Kenyan hospital: an observational study.

scientific article published on April 2009

Empiric deworming to delay HIV disease progression in adults with HIV who are ineligible for initiation of antiretroviral treatment (the HEAT study): a multi-site, randomised trial

article

Empiric treatment of neonatal sepsis in developing countries.

scientific article published on June 2015

Environmental enteric dysfunction: an overview

scientific article

Estimates of possible severe bacterial infection in neonates in sub-Saharan Africa, south Asia, and Latin America for 2012: a systematic review and meta-analysis

scientific article

Excess child mortality after discharge from hospital in Kilifi, Kenya: a retrospective cohort analysis

scientific article published on 13 July 2011

Fraction of all hospital admissions and deaths attributable to malnutrition among children in rural Kenya

scientific article published on December 2008

Global burden of respiratory infections due to seasonal influenza in young children: a systematic review and meta-analysis

scientific article

Guidelines for the management of paediatric cholera infection: a systematic review of the evidence.

scientific article published in November 2018

Guidelines for the treatment of dysentery (shigellosis): a systematic review of the evidence.

scientific article

Guidelines for the treatment of severe acute malnutrition: a systematic review of the evidence for antimicrobial therapy.

scientific article

HIV Type 1 transmission networks among men having sex with men and heterosexuals in Kenya

scientific article published on 17 September 2013

HIV infection, malnutrition, and invasive bacterial infection among children with severe malaria

scientific article

HIV type 1 in a rural coastal town in Kenya shows multiple introductions with many subtypes and much recombination ⬇️

scientific article published on 19 July 2011

HIV-1 virologic failure and acquired drug resistance among first-line antiretroviral experienced adults at a rural HIV clinic in coastal Kenya: a cross-sectional study

scientific article published on 23 January 2014

HIV-Exposed Uninfected Infants Show Robust Memory B-Cell Responses in Spite of a Delayed Accumulation of Memory B Cells: an Observational Study in the First 2 Years of Life.

scientific article published on 11 May 2016

Homozygosity and risk of childhood death due to invasive bacterial disease

scientific article

Implementing a quality management system using good clinical laboratory practice guidelines at KEMRI-CMR to support medical research ⬇️

Incidence and outcome of convulsive status epilepticus in Kenyan children: a cohort study

scientific article

Incidence and predictors of attrition from antiretroviral care among adults in a rural HIV clinic in Coastal Kenya: a retrospective cohort study

scientific article published on 10 May 2015

Incidence and risk factors for neonatal tetanus in admissions to Kilifi County Hospital, Kenya.

scientific article

Indicators of acute bacterial meningitis in children at a rural Kenyan district hospital

scientific article published on December 2004

Individualized breastfeeding support for acutely ill, malnourished infants under 6 months old

scientific article published on 02 August 2019

Influenza surveillance among children with pneumonia admitted to a district hospital in coastal Kenya, 2007-2010

scientific article published in December 2012

Invasive Cronobacter species infection in infants and children admitted to a rural Kenyan hospital with a high prevalence of malnutrition. ⬇️

scientific article published on 13 March 2018

Invasive Gram-negative bacilli are frequently resistant to standard antibiotics for children admitted to hospital in Kilifi, Kenya

scientific article published on 19 May 2005

Invasive Group A Streptococcus Infection among Children, Rural Kenya

scientific article published on February 2016

Invasive Salmonellosis in Kilifi, Kenya

scientific article

Invasive bacterial infections in neonates and young infants born outside hospital admitted to a rural hospital in Kenya

scientific article

Life-threatening hyponatraemia and neurotoxicity during chemotherapy for Burkitt's lymphoma

scientific article published in July 2006

Linear growth following complicated severe malnutrition: 1-year follow-up cohort of Kenyan children.

scientific article

Liquid chromatography–tandem mass spectrometry for the simultaneous quantitation of ceftriaxone, metronidazole and hydroxymetronidazole in plasma from seriously ill, severely malnourished children

scientific article published in January 2017

Low prevalence of transmitted HIV type 1 drug resistance among antiretroviral-naive adults in a rural HIV clinic in Kenya

scientific article published on 11 September 2012

Malaria as a cause of morbidity and mortality in children with homozygous sickle cell disease on the coast of Kenya

scientific article published on July 2009

Management of acute malnutrition in infants aged under 6 months (MAMI): current issues and future directions in policy and research

scientific article published on March 2015

Managing severe infection in infancy in resource poor settings ⬇️

scientific article published on September 30, 2012

Mass antibiotic distribution to reduce mortality among preschool children?

scientific article published on 14 September 2018

Maternal and early onset neonatal bacterial sepsis: burden and strategies for prevention in sub-Saharan Africa

scientific article

Maternal colonization with Streptococcus agalactiae and associated stillbirth and neonatal disease in coastal Kenya

scientific article published on 23 May 2016

Maternal perception of malnutrition among infants using verbal and pictorial methods in Kenya

scientific article

Mesalazine in the initial management of severely acutely malnourished children with environmental enteric dysfunction: a pilot randomized controlled trial

scientific article

Mid-upper arm circumference at age of routine infant vaccination to identify infants at elevated risk of death: a retrospective cohort study in the Gambia

scientific article

Mortality after Inpatient Treatment for Severe Pneumonia in Children: a Cohort Study

scientific article

Mortality among Kenyan children admitted to a rural district hospital on weekends as compared with weekdays

scientific article published in December 2004

Mortality in children with complicated severe acute malnutrition is related to intestinal and systemic inflammation: an observational cohort study.

scientific article published on 21 September 2016

Neonatal seizures in a rural Kenyan District Hospital: aetiology, incidence and outcome of hospitalization.

scientific article

Non-typhi salmonella in children with severe malaria.

scientific article published in December 2002

Outcomes of prevention of mother to child transmission of the human immunodeficiency virus-1 in rural Kenya--a cohort study

scientific article published on 3 October 2015

Over-diagnosis and co-morbidity of severe malaria in African children: a guide for clinicians.

scientific article published on December 2007

Perinatal nutrition and immunity to infection

scientific article

Plasma calprotectin as a biomarker of mortality at antiretroviral treatment initiation in advanced HIV - pilot study

scientific article published on 27 November 2020

Predicting mortality in sick African children: the FEAST Paediatric Emergency Triage (PET) Score

scientific article published on 31 July 2015

Prediction modelling of inpatient neonatal mortality in high-mortality settings

scientific article published on 22 October 2020

Predictors of the risk of malnutrition among children under the age of 5 years in Somalia

scientific article

Presence, persistence and effects of pre-treatment HIV-1 drug resistance variants detected using next generation sequencing: A Retrospective longitudinal study from rural coastal Kenya

article

Progressive increase in antimicrobial resistance among invasive isolates of Haemophilus influenzae obtained from children admitted to a hospital in Kilifi, Kenya, from 1994 to 2002 ⬇️

scientific article

Randomised trials in developing countries

scientific article published on 15 May 2014

Rational development of guidelines for management of neonatal sepsis in developing countries

scientific article published on June 2015

Ready-to-use therapeutic food with elevated n-3 polyunsaturated fatty acid content, with or without fish oil, to treat severe acute malnutrition: a randomized controlled trial

scientific article published on 23 April 2015

Relation between falciparum malaria and bacteraemia in Kenyan children: a population-based, case-control study and a longitudinal study

scientific article

Reliability and accuracy of anthropometry performed by community health workers among infants under 6 months in rural Kenya

scientific article published on 26 February 2012

Research priorities to improve the management of acute malnutrition in infants aged less than six months (MAMI).

scientific article published on 21 April 2015

Risk and causes of paediatric hospital-acquired bacteraemia in Kilifi District Hospital, Kenya: a prospective cohort study

scientific article published on 29 November 2011

Salmonella bacteremia in Kenyan children

scientific article published in March 2006

Severe Pneumonia Among Kenyan Infants and Children—Reply

scientific article published in The Journal of the American Medical Association

Severe acute malnutrition and infection

scientific article

Space-time mapping of wasting among children under the age of five years in Somalia from 2007 to 2010.

scientific article published on 9 January 2016

Stillbirth With Group B Streptococcus Disease Worldwide: Systematic Review and Meta-analyses

scientific article

Systemic inflammation and metabolic disturbances underlie inpatient mortality among ill children with severe malnutrition

scientific article published on 16 February 2022

Temporal association of acute hepatitis A and Plasmodium falciparum malaria in children

scientific article

The impact of rickets on growth and morbidity during recovery among children with complicated severe acute malnutrition in Kenya: A cohort study.

scientific article published on 27 November 2017

The prognostic value of dipstick urinalysis in children admitted to hospital with severe malnutrition

scientific article published on 6 April 2010

The reliability of weight-for-length/height Z scores in children

scientific article

Traumatic lumbar punctures.

scientific article published in January 2004

Treatment failure among Kenyan children with severe pneumonia--a cohort study.

scientific article published on September 2012

Undernutrition and pneumonia mortality.

scientific article published on December 2015

Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics

scientific article published in Scientific Reports

Use of clinical syndromes to target antibiotic prescribing in seriously ill children in malaria endemic area: observational study

scientific article

Viral etiology of severe pneumonia among Kenyan infants and children.

scientific article

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