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List of works by Brett J Baker

A new view of the tree of life

scientific article (publication date: 11 April 2016)

A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.

scientific article

Asgard archaea illuminate the origin of eukaryotic cellular complexity.

scientific article published on 11 January 2017

Author Correction: Diversity, ecology and evolution of Archaea

scientific article published on 19 May 2020

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 12 November 2020

Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms

scientific article

Community proteomics of a natural microbial biofilm

scientific article published on 5 May 2005

Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling

scientific article

Community-wide analysis of microbial genome sequence signatures

scientific article

Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota

scientific article published on 14 February 2018

Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids

article published in 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

scientific article published in February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales

scientific article

Desulfotomaculum and Methanobacterium spp. dominate a 4- to 5-kilometer-deep fault

scientific article

Diversity, ecology and evolution of Archaea

scientific article published on 04 May 2020

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

scientific article

Enigmatic, ultrasmall, uncultivated Archaea.

scientific article

Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments

scientific article published in Nature Communications

Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes.

scientific article

Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote

scientific article

Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs.

scientific article published on 19 January 2016

Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community

scientific article

Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume

scientific article

Genomes of six viruses that infect Asgard archaea from deep-sea sediments

scientific article published in 2022

Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea

scientific article

Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments

scientific article published on 2 December 2015

Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea

scientific article published on 15 February 2016

Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments

scientific article

Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction

scientific article

Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches

scientific article

Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches

scientific article published on 13 January 2017

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

scientific article

Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil

article by Hernando P Bacosa et al published October 2018 in The ISME Journal

Insights into the diversity of eukaryotes in acid mine drainage biofilm communities.

scientific article

Kinetics and Identities of Extracellular Peptidases in Subsurface Sediments of the White Oak River Estuary, North Carolina

scientific article published on 17 September 2019

Lineages of acidophilic archaea revealed by community genomic analysis

scientific article

Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico "Dead Zone".

scientific article published on 12 September 2017

Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota

scientific article

Metabolically active eukaryotic communities in extremely acidic mine drainage.

scientific article published on October 2004

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico "Dead Zone"

scientific article published on 06 September 2018

Microbial communities in acid mine drainage.

scientific article

Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents

scientific article published in January 2014

Microbiological, molecular biological and stable isotopic evidence for nitrogen fixation in the open waters of Lake Michigan.

scientific article

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume

scientific article published on 4 July 2013

Origins and diversification of sulfate-respiring microorganisms

scientific article

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.

scientific article

Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill

scientific article

Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State

scientific article published in April 2003

Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 08 June 2020

Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling

scientific article published on 03 May 2016

The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats

scientific article published on 21 May 2013

Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon.

scientific article

Two decades of bacterial ecology and evolution in a freshwater lake

scientific article published on 3 January 2025

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