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List of works by Salim Bougouffa

Bioprospecting Red Sea Coastal Ecosystems for Culturable Microorganisms and Their Antimicrobial Potential

scientific article published on 10 September 2016

Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility

scientific article published in 2024

Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853

scientific article

Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs)

scientific article published on 17 December 2019

Complete Genome Sequence of Paenibacillus sp. JZ16, a Plant Growth Promoting Root Endophytic Bacterium of the Desert Halophyte Zygophyllum Simplex

scientific article published on 03 February 2020

Complete genome sequence of the endophytic bacterium Cellulosimicrobium sp. JZ28 isolated from the root endosphere of the perennial desert tussock grass Panicum turgidum

scientific article published on 14 March 2020

DEOP: a database on osmoprotectants and associated pathways

scientific article

DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species.

scientific article

DESM: portal for microbial knowledge exploration systems

scientific article

Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge

scientific article published on 8 March 2016

Distinctive microbial community structure in highly stratified deep-sea brine water columns

scientific article

Draft Genome Sequences of Four Salmonella enterica subsp. enterica Serovar Enteritidis Strains Implicated in Infections of Avian and Human Hosts

scientific article published on 25 January 2018

Draft genome of an Aerophobetes bacterium reveals a facultative lifestyle in deep-sea anaerobic sediments

Effect of copper treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis

scientific article

Effect of polybrominated diphenyl ether (PBDE) treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis

scientific article

Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 With Volatile-Mediated Antagonistic Activity Against Phytophthora infestans

scientific article published on 11 March 2020

Genome Reduction in Psychromonas Species within the Gut of an Amphipod from the Ocean's Deepest Point

scientific article published on 10 April 2018

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

scientific article published on 22 December 2016

Genomic analysis reveals versatile heterotrophic capacity of a potentially symbiotic sulfur-oxidizing bacterium in sponge

scientific article

In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.

scientific article published on 22 May 2018

In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system.

scientific article

LeafGo: Leaf to Genome, a quick workflow to produce high-quality de novo plant genomes using long-read sequencing technology

scientific article published on 03 September 2021

Marine biofilms constitute a bank of hidden microbial diversity and functional potential

scientific article published in Nature Communications

Metagenomics as a preliminary screen for antimicrobial bioprospecting

scientific article

Mining biosynthetic gene clusters in Virgibacillus genomes

scientific article published on 03 September 2019

Origin and evolution of the bread wheat D genome

scientific article published in 2024

Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues

scientific article published on 24 April 2014

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

scientific article published on 14 October 2015

Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system

scientific article

Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool

scientific article

The genome sequence of the wild tomatoSolanum pimpinellifoliumprovides insights into salinity tolerance

Toward understanding the dynamics of microbial communities in an estuarine system

scientific article

Transcriptome analysis elucidates key developmental components of bryozoan lophophore development

scientific article published on 10 October 2014

Uncoupled Quorum Sensing Modulates the Interplay of Virulence and Resistance in a Multidrug-Resistant Clinical Pseudomonas aeruginosa Isolate Belonging to the MLST550 Clonal Complex

scientific article published on 27 March 2019

bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli

scientific article

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