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List of works by Anthony Mathelier

A map of direct TF-DNA interactions in the human genome

article by Marius Gheorghe et al published 28 February 2019 in Nucleic Acids Research

A map of direct TF-DNA interactions in the human genome

A promoter-level mammalian expression atlas

scientific article

A role for YY1 in sex-biased transcription revealed through X-linked promoter activity and allelic binding analyses

article

An integrated expression atlas of miRNAs and their promoters in human and mouse.

scientific article

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs

scientific article published on 9 June 2016

Chromosomal periodicity and positional networks of genes in Escherichia coli

scientific article

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.

scientific article

DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo

scientific article published on 18 August 2016

DNA copy number motifs are strong and independent predictors of survival in breast cancer

scientific article published on 02 April 2020

DNA methylation at enhancers identifies distinct breast cancer lineages

scientific article published on 9 November 2017

DNA methylation profiling in human Huntington's disease brain.

scientific article published on 6 March 2016

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium

scientific article published on 4 November 2015

DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.

scientific article published on 19 May 2016

Environmental and Physiological Insights from Microbial Genome Sequences

Evaluating the impact of single nucleotide variants on transcription factor binding.

scientific article published on 04 August 2016

Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response

scientific article published on 05 June 2018

Human enhancers harboring specific sequence composition, activity, and genome organization are linked to the immune response

article

Identification of altered cis-regulatory elements in human disease

scientific article

Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis

scientific article published on 18 September 2019

Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment

scientific article

Intervene: a tool for intersection and visualization of multiple gene or genomic region sets

scientific article

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

scientific article

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

scientific article

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

scholarly article by Aziz Khan et al published 4 January 2018 in Nucleic Acids Research

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

scientific article published in 2021

JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

scientific article published in 2023

JASPAR RESTful API: accessing JASPAR data from any programming language

scientific article published on 15 December 2017

Large scale chromosomal mapping of human microRNA structural clusters ⬇️

scientific article published on February 26, 2013

MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations

scientific article published on 24 July 2018

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

scientific article

MirGeneDB 2.0: the metazoan microRNA complement

scientific article published on 01 January 2020

MirGeneDB2.0: the curated microRNA Gene Database

article

PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina.

scientific article published on 10 August 2016

Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers

scientific article published on 19 April 2022

Put science first and formatting later

scientific article published on 12 April 2018

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

scientific article published on 8 November 2017

Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers

scientific article published on 11 October 2018

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

scientific article

The next generation of transcription factor binding site prediction

scientific article

The potential of microRNAs in personalized medicine against cancers ⬇️

scientific article

Twenty-Seven Tamoxifen-Inducible iCre-Driver Mouse Strains for Eye and Brain, Including Seventeen Carrying a New Inducible-First Constitutive-Ready Allele

article

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

scientific article published on 27 October 2016

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses

scientific article

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