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List of works by Dario Grattapaglia

A 3K Axiom SNP array from a transcriptome-wide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze

scientific article published on 31 August 2020

A cost-effective approach to DNA methylation detection by Methyl Sensitive DArT sequencing

scientific article published on 04 June 2020

A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species

scientific article published on 13 February 2015

A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus.

scientific article published on 22 September 2006

A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae).

scientific article published on 11 October 2005

A new set of 182 microsatellites for Eucalyptus: characterization and mapping in a four-species consensus linkage map.

scientific article

A novel genome-wide microsatellite resource for species of Eucalyptus with linkage-to-physical correspondence on the reference genome sequence

scientific article

A reference linkage map for Eucalyptus.

scientific article

A selected set of EST-derived microsatellites, polymorphic and transferable across 6 species of eucalyptus.

scientific article published on 15 March 2010

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments

scientific article published on 05 October 2011

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

scientific article

Agriculture: Feeding the future

scientific article

An international parentage and identification panel for the domestic cat (Felis catus)

scientific article published on August 2007

Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus

article

Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model.

scientific article

Assessment of SNPs for linkage mapping in Eucalyptus: construction of a consensus SNP/microsatellite map from two unrelated pedigrees.

scientific article

Biotech MERCOSUR project: an integrated genotyping and phenotyping platform of Eucalyptus germplasm for mapping purposes

scientific article

Brazilian population database for the 13 STR loci of the AmpFlSTR Profiler Plus and Cofiler multiplex kits

scientific article published on 01 April 2001

Comparative assessment of SNPs and microsatellites for fingerprinting, parentage and assignment testing in species of Eucalyptus.

scientific article

Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species

scientific article published on 21 June 2002

Design and evaluation of a sequence capture system for genome-wide SNP genotyping in highly heterozygous plant genomes: a case study with a keystone Neotropical hardwood tree genome

article

Development of DArT (Diversity Arrays Technology) for high-throughput genotyping of Pinus taeda and closely related species

scientific article

Diversity Arrays Technology (DArT) and next-generation sequencing combined: genome-wide, high throughput, highly informative genotyping for molecular breeding of Eucalyptus.

scientific article

Enviromics in breeding: applications and perspectives on envirotypic-assisted selection

scientific article published on 22 September 2020

Eucalyptus applied genomics: from gene sequences to breeding tools

scientific article

Eucalyptus research in the post-genome era.

scientific article

Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1 hybrids

scientific article

Evidences for multiple maternal lineages of Caryocar brasiliense populations in the Brazilian Cerrado based on the analysis of chloroplast DNA sequences and microsatellite haplotype variation.

scientific article published on January 2003

Examining the cause of high inbreeding depression: analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis.

scientific article

Fast and inexpensive protocols for consistent extraction of high quality DNA and RNA from challenging plant and fungal samples for high-throughput SNP genotyping and sequencing applications

scientific article published in PLoS ONE

Genetic associations with resistance to Meloidogyne enterolobii in guava (Psidium sp.) using cross-genera SNPs and comparative genomics to Eucalyptus highlight evolutionary conservation across the Myrtaceae

scientific article published in 2022

Genetic composition of Brazilian population samples based on a set of twenty-eight ancestry informative SNPs

scientific article

Genetic diversity and assessment of 23 microsatellite markers for parentage testing of Santa Inês hair sheep in Brazil

scientific article published on 8 May 2012

Genetic mapping of QTLs controlling vegetative propagation in Eucalyptus grandis and E. urophylla using a pseudo-testcross strategy and RAPD markers.

scientific article published in June 1995

Genetic structure and mating system of Manilkara huberi (Ducke) A. Chev., a heavily logged Amazonian timber species

scientific article published on 14 September 2007

Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly-valued ecologically keystone Neotropical timber forest tree

scientific article published on 13 December 2017

Genome wide selection for Eucalyptus improvement at international paper in Brazil

scientific article

Genome-wide SNP discovery from a pooled sample of accessions of the biofuel plant Jatropha curcas based on whole-transcriptome Illumina resequencing

scientific article

Genome-wide SNP genotyping as a simple and practical tool to accelerate the development of inbred lines in outbred tree species: An example in cacao (Theobroma cacao L.)

scientific article published in 2022

Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae

scientific article published on 29 December 2015

Genome-wide genotyping and SNP discovery by ultra-deep Restriction-Associated DNA (RAD) tag sequencing of pooled samples of E. grandis and E. globulus.

scientific article published on 13 September 2011

Genome-wide patterns of recombination, linkage disequilibrium and nucleotide diversity from pooled resequencing and single nucleotide polymorphism genotyping unlock the evolutionary history of Eucalyptus grandis.

scientific article

Genomic Comparison among Lethal Invasive Strains of Streptococcus pyogenes Serotype M1.

scientific article published on 23 October 2017

Genomic Selection for growth traits in Eucalyptus: accuracy within and across breeding populations.

scientific article

Genomic characterization of DArT markers based on high-density linkage analysis and physical mapping to the Eucalyptus genome.

scientific article

Genomic characterization, high-density mapping and anchoring of DArT markers to the reference genome of Eucalyptus.

scientific article published on 13 September 2011

Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus.

scientific article published on 11 July 2017

Genomic prediction of growth and wood quality traits in Eucalyptus benthamii using different genomic models and variable SNP genotyping density

scientific article published on 27 May 2022

Genomic relationships reveal significant dominance effects for growth in hybrid Eucalyptus

scientific article published on 28 November 2017

Genomic relationship–based genetic parameters and prospects of genomic selection for growth and wood quality traits in Eucalyptus benthamii

scientific article published in 2021

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees

article

Genomics of growth traits in forest trees.

scientific article published on 29 January 2009

Haplotype diversity of 17 Y-chromosome STRs in Brazilians.

scientific article

High resolution microsatellite based analysis of the mating system allows the detection of significant biparental inbreeding in Caryocar brasiliense, an endangered tropical tree species.

scientific article published on January 2001

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species

scientific article

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

scientific article

Historical genetics: spatiotemporal analysis of the formation of the Brazilian population

scientific article

How many genes might underlie QTLs for growth and wood quality traits in Eucalyptus?

scientific article

Identification of a novel QTL contributing to rust resistance in Eucalyptus.

scientific article

Impacts of population structure and analytical models in genome-wide association studies of complex traits in forest trees: a case study in Eucalyptus globulus

scientific article

Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations

scientific article published on 25 September 2018

Interspecific discovery and expression profiling of Eucalyptus micro RNAs by deep sequencing.

scientific article

Microsatellite based genetic diversity and relationships among ten Creole and commercial cattle breeds raised in Brazil

scientific article

Parentage Reconstruction in Eucalyptus nitens Using SNPs and Microsatellite Markers: A Comparative Analysis of Marker Data Power and Robustness

scientific article

Population analysis of vitamin D receptor polymorphisms and the role of genetic ancestry in an admixed population.

scientific article

Population genetic analysis and phylogeny reconstruction in Eucalyptus (Myrtaceae) using high-throughput, genome-wide genotyping

scientific article

Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation

scientific article published on 01 November 2003

Power of microsatellite markers for fingerprinting and parentage analysis in Eucalyptus grandis breeding populations

scientific article published on 15 December 2004

Progress in Myrtaceae genetics and genomics: Eucalyptus as the pivotal genus

article

QTL associated with resistance to defoliation (Cylindrocladium pteridis) in Eucalyptus spp.

scientific article

Quantitative genetic parameters for growth and wood properties in Eucalyptus "urograndis" hybrid using near-infrared phenotyping and genome-wide SNP-based relationships

scientific article published on 24 June 2019

Regional heritability mapping and genome-wide association identify loci for complex growth, wood and disease resistance traits in Eucalyptus.

scientific article published on 7 November 2016

Resistance to rust ( Puccinia psidii Winter) in eucalyptus: mode of inheritance and mapping of a major gene with RAPD markers

scientific article published on 19 September 2003

Retrospective selection of elite parent trees using paternity testing with microsatellite markers: an alternative short term breeding tactic for Eucalyptus

scientific article published on 5 March 2004

Stability of Genomic Selection prediction models across ages and environments.

scientific article

The Eucalyptus grandis Genome Project: Genome and transcriptome resources for comparative analysis of woody plant biology

scientific article

The genome of Eucalyptus grandis

scientific article

Y-chromosome STR haplotype diversity in Brazilian populations.

scientific article published in April 2005

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