List of works - Anne Thessen

20 GB in 10 minutes: A case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration

scientific article

20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration

scientific article published on 17 September 2018

A Global Census of Marine Microbes

article

A Proposed Metadata Standard for Recording and Sharing Attribution Information in Biodiversity

scientific article

A Simple Standard for Sharing Ontological Mappings (SSSOM)

preprint published on 15 December 2021

A new paradigm for science: nurturing the ecosystem

A new paradigm for the scientific enterprise: nurturing the ecosystem

scientific article published on 20 June 2018

A novel curation system to facilitate data integration across regional citizen science survey programs

scientific article published on 29 July 2020

A statistical assessment of population trends for data deficient Mexican amphibians

scientific article

Adoption of Machine Learning Techniques in Ecology and Earth Science

scientific article

An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges

scientific article published in 2023

Applications of natural language processing in biodiversity science

scientific article (publication date: 2012)

Automated Trait Extraction using ClearEarth, a Natural Language Processing System for Text Mining in Natural Sciences

scientific article

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science ⬇️

scientific article

Building Your Own Big Data Analysis Infrastructure for Biodiversity Science

scientific article published in 2017

Calculating in situ degradation rates of hydrocarbon compounds in deep waters of the Gulf of Mexico

scientific article

Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Community-Driven Harmonized Language

scientific article published on 26 August 2021

Challenges with using names to link digital biodiversity information

scientific article

Community Approaches for Integrating Environmental Exposures into Human Models of Disease

scientific article published on 28 December 2020

Crassostrea virginica grazing on toxic and non-toxic diatoms

scientific article published on 14 October 2009

Data Conservancy Provenance, Context, and Lineage Services: Key Components for Data Preservation and Curation

Data Infrastructures for Estuarine and Coastal Ecological Syntheses

article by Anne Thessen et al published 9 November 2015 in Estuaries and Coasts

Data issues in the life sciences ⬇️

scientific article published on November 28, 2011

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium

scientific article published on 15 November 2023

Distribution, Abundance and Domoic Acid Analysis of the Toxic Diatom Genus Pseudo-nitzschia from the Chesapeake Bay

article

EFFECT OF SALINITY ONPSEUDO-NITZSCHIASPECIES (BACILLARIOPHYCEAE) GROWTH AND DISTRIBUTION

Ecosystems Monitoring: An Information Extraction and Event Processing Scientific Workflow

Effect of salinity on the distribution, growth, and toxicity of Karenia spp

article

Emerging semantics to link phenotype and environment

scientific article

Finding our way through phenotypes

scientific article

From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences

Geoinformatics: Toward an integrative view of Earth as a system

Implementation of Zebrafish Ontologies for Toxicology Screening

scientific article published on 11 March 2022

Improving the discoverability of biodiversity data using the Global Names Finder

scientific article published in 2022

Intra- and interspecies differences in growth and toxicity of Pseudo-nitzschia while using different nitrogen sources

article

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

preprint published in 2023

KG-Hub—building and exchanging biological knowledge graphs

scientific article published in 2023

Knowledge extraction and semantic annotation of text from the encyclopedia of life

scientific article (publication date: 2014)

Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science

Meeting Report: BioSharing at ISMB 2010

scientific article (publication date: 4 December 2010)

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier

scientific article published on 28 November 2018

Ontology-based data integration for advancing toxicological knowledge

scientific article published on 29 May 2019

People are essential to linking biodiversity data ⬇️

journal article from 'Database' published in 2020

Progress toward a universal biomedical data translator

publication published in 2022

Proper Attribution for Curation and Maintenance of Research Collections: Metadata Recommendations of the RDA/TDWG Working Group

scientific article published in 2019

Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health

article

Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity

scientific article

Semantic Web and Big Data meets Applied Ontology

scientific article

Synthesis of primary production in the Arctic Ocean: III. Nitrate and phosphate based estimates of net community production

article

Synthesizer: Expediting synthesis studies from context-free data with information retrieval techniques

scientific article

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

The exposome and nutritional pharmacology and toxicology: a new application for metabolomics

scientific article published in January 2023

The influence of droplet size and biodegradation on the transport of subsurface oil droplets during theDeepwater Horizonspill: a model sensitivity study

article

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research

The taxonomic significance of species that have only been observed once: the genus Gymnodinium (Dinoflagellata) as an example

scientific article (publication date: 2012)

The user's view on biodiversity data sharing — Investigating facts of acceptance and requirements to realize a sustainable use of research data —

article by Neela Enke et al published September 2012 in Ecological Informatics

Transcriptomics and microbial eukaryote diversity: a way forward ⬇️

scientific article published on August 31, 2012

Transforming the study of organisms: Phenomic data models and knowledge bases

scientific article published on 24 November 2020

Workshop Report: Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Harmonized Language

scientific article published on 28 January 2023

List of works by Anne Thessen

20 GB in 10 minutes: A case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration

20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration

A Global Census of Marine Microbes

A Proposed Metadata Standard for Recording and Sharing Attribution Information in Biodiversity

A Simple Standard for Sharing Ontological Mappings (SSSOM)

A new paradigm for science: nurturing the ecosystem

A new paradigm for the scientific enterprise: nurturing the ecosystem

A novel curation system to facilitate data integration across regional citizen science survey programs

A statistical assessment of population trends for data deficient Mexican amphibians

Adoption of Machine Learning Techniques in Ecology and Earth Science

An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges

Applications of natural language processing in biodiversity science

Automated Trait Extraction using ClearEarth, a Natural Language Processing System for Text Mining in Natural Sciences

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science ⬇️

Building Your Own Big Data Analysis Infrastructure for Biodiversity Science

Calculating in situ degradation rates of hydrocarbon compounds in deep waters of the Gulf of Mexico

Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Community-Driven Harmonized Language

Challenges with using names to link digital biodiversity information

Community Approaches for Integrating Environmental Exposures into Human Models of Disease

Crassostrea virginica grazing on toxic and non-toxic diatoms

Data Conservancy Provenance, Context, and Lineage Services: Key Components for Data Preservation and Curation

Data Infrastructures for Estuarine and Coastal Ecological Syntheses

Data issues in the life sciences ⬇️

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium

Distribution, Abundance and Domoic Acid Analysis of the Toxic Diatom Genus Pseudo-nitzschia from the Chesapeake Bay

EFFECT OF SALINITY ONPSEUDO-NITZSCHIASPECIES (BACILLARIOPHYCEAE) GROWTH AND DISTRIBUTION

Ecosystems Monitoring: An Information Extraction and Event Processing Scientific Workflow

Effect of salinity on the distribution, growth, and toxicity of Karenia spp

Emerging semantics to link phenotype and environment

Finding our way through phenotypes

From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences

Geoinformatics: Toward an integrative view of Earth as a system

Implementation of Zebrafish Ontologies for Toxicology Screening

Improving the discoverability of biodiversity data using the Global Names Finder

Intra- and interspecies differences in growth and toxicity of Pseudo-nitzschia while using different nitrogen sources

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

KG-Hub—building and exchanging biological knowledge graphs

Knowledge extraction and semantic annotation of text from the encyclopedia of life

Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science

Meeting Report: BioSharing at ISMB 2010

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier

Ontology-based data integration for advancing toxicological knowledge

People are essential to linking biodiversity data ⬇️

Progress toward a universal biomedical data translator

Proper Attribution for Curation and Maintenance of Research Collections: Metadata Recommendations of the RDA/TDWG Working Group

Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health

Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity

Semantic Web and Big Data meets Applied Ontology

Synthesis of primary production in the Arctic Ocean: III. Nitrate and phosphate based estimates of net community production

Synthesizer: Expediting synthesis studies from context-free data with information retrieval techniques

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

The exposome and nutritional pharmacology and toxicology: a new application for metabolomics

The influence of droplet size and biodegradation on the transport of subsurface oil droplets during theDeepwater Horizonspill: a model sensitivity study

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research

The taxonomic significance of species that have only been observed once: the genus Gymnodinium (Dinoflagellata) as an example

The user's view on biodiversity data sharing — Investigating facts of acceptance and requirements to realize a sustainable use of research data —

Transcriptomics and microbial eukaryote diversity: a way forward ⬇️

Transforming the study of organisms: Phenomic data models and knowledge bases

Workshop Report: Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Harmonized Language

“Windows of opportunity” for dinoflagellate blooms: Reduced microzooplankton net growth coupled to eutrophication