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List of works by Sandra Orchard

6th HUPO Annual World Congress - Proteomics Standards Initiative Workshop 6-10 October 2007, Seoul, Korea

scientific article published in April 2008

A Coordinated Approach by Public Domain Bioinformatics Resources to Aid the Fight Against Alzheimer's Disease Through Expert Curation of Key Protein Targets

scientific article published on 20 July 2020

A community standard format for the representation of protein affinity reagents

scientific article

A domain level interaction network of amyloid precursor protein and Abeta of Alzheimer's disease

scientific article published on June 2010

A new reference implementation of the PSICQUIC web service

scientific article published on 13 May 2013

A novel conformationally restricted protein kinase C inhibitor, Ro 31-8425, inhibits human neutrophil superoxide generation by soluble, particulate and post-receptor stimuli

scientific article published in November 1991

A protein interaction network for the large conductance Ca(2+)-activated K(+) channel in the mouse cochlea

scientific article

A visual review of the interactome of LRRK2: Using deep-curated molecular interaction data to represent biology

scientific article

Activities at the Universal Protein Resource (UniProt)

scientific article (publication date: 2014)

Advances in the development of common interchange standards for proteomic data

scientific article

An intrinsically disordered proteins community for ELIXIR

scientific article published on 15 October 2019

Analyzing protein-protein interaction networks

scientific article published on 02 March 2012

Annotating the human proteome

scientific article

Annotation of biologically relevant ligands in UniProtKB using ChEBI

scientific article published on 9 December 2022

Annual spring meeting of the Proteomics Standards Initiative

scientific article published in October 2009

Annual spring meeting of the Proteomics Standards Initiative 23-25 April 2008, Toledo, Spain

scientific article published in October 2008

Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4–6, 2005

article

Best Practice Data Life Cycle Approaches for the Life Sciences

scholarly article

Best practice data life cycle approaches for the life sciences

article

BioJS: an open source JavaScript framework for biological data visualization

scientific article

Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions

scientific article

Caenorhabditis elegans phosphatase complexes in UniProtKB and Complex Portal

scientific article published on 16 January 2020

Capturing cooperative interactions with the PSI-MI format

scientific article (publication date: 2013)

Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set

scientific article published in Nature Communications

Capturing variation impact on molecular interactions: the IMEx Consortium mutations data set

CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination

scientific article published on 01 October 2019

CausalTab: PSI-MITAB 2.8 updated format for signaling data representation and dissemination

scientific article published on 6 August 2018

Challenges in the annotation of pseudoenzymes in databases: the UniProtKB approach

scientific article published on 16 October 2019

Charting plant interactomes: possibilities and challenges

scientific article published on 07 March 2008

Common interchange standards for proteomics data: Public availability of tools and schema

scientific article

Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes

scientific article published on 01 January 2019

Complex Portal 2022: new curation frontiers

scientific article

ComplexViewer: visualization of curated macromolecular complexes

scientific article published on 3 August 2017

Conserved BK channel-protein interactions reveal signals relevant to cell death and survival

scientific article

Controlled vocabularies and ontologies in proteomics: overview, principles and practice

scientific article

Correction: Conserved BK Channel-Protein Interactions Reveal Signals Relevant to Cell Death and Survival.

scientific article

Current status of proteomic standards development

scientific article

Data Standardization and Sharing—The work of the HUPO-PSI ⬇️

scientific article published on March 20, 2013

Data Standardization by the HUPO-PSI: How has the Community Benefitted? ⬇️

scientific article published on January 1, 2011

Data standardization and the HUPO proteomics standards initiative

Debunking minimum information myths: one hat need not fit all

Development of data representation standards by the human proteome organization proteomics standards initiative

scientific article

Emerging concepts in pseudoenzyme classification, evolution, and signaling

scientific article published on 13 August 2019

Enabling BioSharing - a report on the Annual Spring Workshop of the HUPO-PSI April 11-13, 2011, EMBL-Heidelberg, Germany

scientific article

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.

scientific article published on 11 April 2018

Ending the “Publish and Vanish” Culture: How the Data Standardization Process Will Assist in Data Harvesting

article

Entering the Implementation Era A report on the HUPO-PSI Fall workshop 25–27 September 2006, Washington DC, USA

scholarly article by Sandra Orchard published in February 2007

Erratum: Corrigendum: Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

article

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data

scientific article

FAIR adoption, assessment and challenges at UniProt

scientific article published on 20 September 2019

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France

scientific article

From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase

scientific article

From proteomics data representation to public data flow: a report on the HUPO-PSI workshop September 2011, Geneva, Switzerland

scientific article published on February 2012

Further advances in the development of a data interchange standard for proteomics data

scientific article published in October 2003

Further steps in standardisation. Report of the second annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17-20th April 2005).

scientific article published in September 2005

Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25-27(th) October, 2004.

scientific article published in February 2005

Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data

scientific article published on 13 May 2020

Gene regulation knowledge commons: community action takes care of DNA binding transcription factors

scientific article

HUPO Publications Committee Meeting 21 April 2006, San Francisco, CA, USA

scholarly article by Sandra Orchard published in August 2006

HUPO World Congress Publication Committee meeting. August 2008, Amsterdam, The Netherlands

scientific article published in February 2009

Human Proteome Organisation Proteomics Standards Initiative Pre-Congress Initiative

article

Human Proteome Organization Proteomics Standards Initiative: data standardization, a view on developments and policy

scientific article

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.

scientific article published on 21 October 2019

Implementing data standards: a report on the HUPOPSI workshop September 2009, Toronto, Canada

scientific article published in May 2010

Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer’s Disease Data

article

Inhibitors of protein kinase C. 1. 2,3-bisarylmaleimides ⬇️

scientific article published on January 1, 1992

Inhibitors of protein kinase C. 2. Substituted bisindolylmaleimides with improved potency and selectivity

scientific article published on March 20, 1992

IntAct Database for Accessing IMEx's Contextual Metadata of Molecular Interactions

scientific article published in October 2024

IntAct--open source resource for molecular interaction data

scientific article (publication date: 2007)

IntAct: an open source molecular interaction database

scientific article

Integration of macromolecular complex data into the Saccharomyces Genome Database

scientific article published on 01 January 2019

Integration of transcription coregulator complexes with sequence-specific DNA-binding factor interactomes

scientific article published in 2021

InterPro, progress and status in 2005

scientific article

InterPro: an integrated documentation resource for protein families, domains and functional sites

scientific article

Isoenzyme specificity of bisindolylmaleimides, selective inhibitors of protein kinase C

scientific article

JAMI: a Java library for molecular interactions and data interoperability

scientific article published on 11 April 2018

K252a is a potent and selective inhibitor of phosphorylase kinase

scientific article

Kinases as targets: prospects for chronic therapy.

scientific article

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data

scientific article

Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands

scientific article published in February 2009

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

scientific article (publication date: 25 December 2010)

Meeting Report: BioSharing at ISMB 2010

scientific article (publication date: 4 December 2010)

Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany

scientific article published on 9 October 2014

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

scientific article

Minimum Reporting Guidelines for Proteomics Released by the Proteomics Standards Initiative

scientific article published on 01 October 2008

Minimum information about a bioactive entity (MIABE).

scientific article

Minimum information about a protein affinity reagent (MIAPAR)

scientific article published on 01 July 2010

Modulation of cellular processes by H7, a non-selective inhibitor of protein kinases

scientific article

Molecular interaction databases ⬇️

scientific article published on May 1, 2012

Molecular interactions and data standardisation

scientific article

New developments in the InterPro database

scientific article published in January 2007

Non-coding RNA regulatory networks

scientific article published on 04 September 2019

Nucleoside diphosphate kinase (NDPK, NM23, AWD): recent regulatory advances in endocytosis, metastasis, psoriasis, insulin release, fetal erythroid lineage and heart failure; translational medicine exemplified.

scientific article

Omics Technologies, Data and Bioinformatics Principles ⬇️

scientific article published on January 1, 2011

Ongoing and future developments at the Universal Protein Resource

scientific article

Overview of the interactive task in BioCreative V

scientific article (publication date: 2016)

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

scientific article (publication date: 29 June 2011)

Perspectives on tracking data reuse across biodata resources

Phosphorylation of SLP-76 by the ZAP-70 protein-tyrosine kinase is required for T-cell receptor function

scientific article

Potent collagenase inhibitors prevent interleukin-1-induced cartilage degradation in vitro

scientific article published on 01 January 1991

Potent selective inhibitors of protein kinase C

article

Preparing molecular interaction data for publication

scientific article

Preparing to work with big data in proteomics - a report on the HUPO-PSI Spring Workshop: April 15-17, 2013, Liverpool, UK.

scientific article published in October 2013

Progress in Establishing Common Standards for Exchanging Proteomics Data: The Second Meeting of the HUPO Proteomics Standards Initiative

scientific article

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

scientific article (publication date: August 2008)

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

scientific article

Protein kinase C. Measurement of translocation, activation, and role in cellular responses

article

Protein kinase C: is its pivotal role in cellular activation over-stated?

scientific article published on February 1994

Proteomic Data Standardization, Deposition and Exchange

article published in 2006

Proteomic data exchange and storage: the need for common standards and public repositories

scientific article

Proteomic temporal profile of human brain endothelium after oxidative stress

scientific article published on 16 December 2010

Proteomics and Beyond: a report on the 3rd Annual Spring Workshop of the HUPO-PSI 21-23 April 2006, San Francisco, CA, USA.

scientific article published on August 2006

Proteomics and data standardisation

Proteomics: from technology development to biomarker applications

article

Publication Committee meeting. HUPO 5th annual World Congress. Long Beach, CA, USA 30 October 2006.

scientific article published in April 2007

Publisher Correction: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set

scientific article published on 04 March 2019

Reorganizing the protein space at the Universal Protein Resource (UniProt)

scientific article (publication date: 2012)

Rintact: enabling computational analysis of molecular interaction data from the IntAct repository

scientific article

Ro 09-2210 exhibits potent anti-proliferative effects on activated T cells by selectively blocking MKK activity

scientific article published in June 1998

Searching and Extracting Data from the EMBL-EBI Complex Portal

scientific article published in January 2018

Searching and Navigating UniProt Databases

scientific article published in March 2023

Second Joint HUPO publication and Proteomics Standards Initiative workshop

scientific article published on October 2009

Second Proteomics Standards Initiative Spring Workshop

article

Second messengers in inflammation

scientific article published on 01 March 1992

Shared resources, shared costs--leveraging biocuration resources

scientific article

Shotgun proteomics reveals a mitochondrial function for the BK channel in cochlea

scientific article published in 2010

Shouldn't enantiomeric purity be included in the 'minimum information about a bioactive entity? Response from the MIABE group

Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition

scientific article

Substrate specificity and inhibitor profile of human recombinant p56lck from a baculovirus expression vector

scientific article published on August 1996

T-cell signal transduction and the role of protein kinase C

article

Tackling quantitation: a report on the annual Spring Workshop of the HUPO-PSI 28-30 March 2010, Seoul, South Korea

scientific article published in September 2010

Ten years of standardizing proteomic data: a report on the HUPO-PSI Spring Workshop: April 12-14th, 2012, San Diego, USA

scientific article (publication date: September 2012)

The 2023 Report on the Proteome from the HUPO Human Proteome Project

scholarly article published on 17 January 2024

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

scientific article

The Gene Ontology Resource: 20 years and still GOing strong

article

The Gene Ontology knowledgebase in 2023

scientific article published in 2023

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

scientific article (publication date: February 2004)

The HUPO Proteomics Standards Initiative Meeting: Towards Common Standards for Exchanging Proteomics Data

scientific article

The HUPO pre-congress Proteomics Standards Initiative workshop. HUPO 5th annual World Congress. Long Beach, CA, USA 28 October-1 November 2006.

scientific article published in April 2007

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

scientific article (publication date: 2013)

The HUPO proteomics standards initiative--easing communication and minimizing data loss in a changing world

scientific article

The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions

scientific article published on 16 June 2020

The IntAct database: efficient access to fine-grained molecular interaction data

scientific article published on 21 October 2021

The IntAct molecular interaction database in 2010

scientific article (publication date: 2010)

The IntAct molecular interaction database in 2012

scientific article

The InterPro database, 2003 brings increased coverage and new features

scientific article (publication date: 2003)

The MIntAct Project and Molecular Interaction Databases.

scientific article published on January 2016

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

scientific article (publication date: 2014)

The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST)

scientific article published on 30 June 2020

The Protein Feature Ontology: a tool for the unification of protein feature annotations

scientific article

The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

scientific article

The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative

scientific article

The Universal Protein Resource (UniProt) 2009

scientific article (publication date: 2009)

The Universal Protein Resource (UniProt) in 2010

scientific article (publication date: 2010)

The annotation of both human and mouse kinomes in UniProtKB/Swiss-Prot: one small step in manual annotation, one giant leap for full comprehension of genomes

scientific article published on 24 April 2008

The cardiovascular gene annotation initiative: Impact on data analysis

scientific article published in July 2015

The complex portal--an encyclopaedia of macromolecular complexes

scientific article

The effect of new potent selective inhibitors of protein kinase C on the neutrophil respiratory burst

scientific article published on September 1990

The implications of alternative splicing in the ENCODE protein complement

scientific article (publication date: 27 March 2007)

The inhibitory profiles of hog pancreatic and human rheumatoid synovial cell phospholipases A2

scientific article published on 01 January 1986

The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study

scientific article published in January 2023

The minimum information required for reporting a molecular interaction experiment (MIMIx).

scientific article published on August 2007

The proteomics standards initiative

scientific article

The publication and database deposition of molecular interaction data

scientific article

The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments

scientific article

Therapeutic potential of protein kinase C inhibitors

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article

Towards BioDBcore: a community-defined information specification for biological databases

scientific article (publication date: 2011)

Towards a unified open access dataset of molecular interactions

scientific article published on 01 December 2020

UniProt Knowledgebase: a hub of integrated protein data

scientific article (publication date: 2011)

UniProt Tools: BLAST, Align, Peptide Search, and ID Mapping

scientific article published in March 2023

UniProt and Mass Spectrometry-Based Proteomics—A 2-Way Working Relationship

scientific article published in August 2023

UniProt and Mass Spectrometry-Based Proteomics—A 2-Way Working Relationship

UniProt: a hub for protein information

scientific article (publication date: 2015)

UniProt: a worldwide hub of protein knowledge

scientific article published on 01 January 2019

UniProt: the Universal Protein Knowledgebase in 2023

scientific article published on 21 November 2022

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

scientific article published on 12 May 2020

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

scientific article published in December 2020

Yeast non-coding RNA interaction network

scientific article published on 12 July 2017

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