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List of works by Patrick Ruch

A cross-site antimicrobial resistance surveillance system using semantic web technologies.

scientific article

A frame-based representation of ICD-10.

scientific article published on January 2003

A light knowledge model for linguistic applications.

scientific article published on January 2001

A medical informatics perspective on decision support systems. Findings from the yearbook 2012 section on decision support

scientific article published on January 1, 2012

A medical informatics perspective on health informatics 3.0. Findings from the Yearbook 2011 section on health informatics 3.0

scientific article published on January 1, 2011

A multi-sample automatic system forin situelectrochemical X-ray diffraction synchrotron measurements

scientific article published on 16 October 2007

A toolset for medical text processing

scientific article published in January 2000

A user-friendly tool for medical-related patent retrieval

scientific article published in January 2012

Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt

scientific article published on 01 January 2018

Advancing biomedical image retrieval: development and analysis of a test collection

scientific article

An advanced search engine for patent analytics in medicinal chemistry

scientific article published in 2012

Application of text-mining for updating protein post-translational modification annotation in UniProtKB

scientific article

Assisted knowledge discovery for the maintenance of clinical guidelines

scientific article (publication date: 2013)

Automatic medical encoding with SNOMED categories

scientific article

Automatic medical knowledge acquisition using question-answering.

scientific article

Beyond BiCIKL: Towards Building an AI-Assisted “Biodiversity Supergraph”

scientific article published in 2024

Biomedical data management: a proposal framework

scientific article

BiotXplorer: Navigating Evidence-Based Biotic Interactions

scientific article published in 2024

Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation

scientific article (publication date: 29 May 2012)

Challenges and methodology for indexing the computerized patient record

scientific article published in 2007

Classification and prioritization of biomedical literature for the comparative toxicogenomics database

scientific article published in January 2012

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification

scientific article

Comparing a Rule Based vs. Statistical System for Automatic Categorization of MEDLINE Documents According to Biomedical Specialty

scientific article

Comparing general and medical texts for information retrieval based on natural language processing: an inquiry into lexical disambiguation.

scientific article published in January 2001

Conceptual search in electronic patient record.

scientific article

Controlling the vocabulary for anatomy.

scientific article

Coping with the variability of medical terms.

scientific article published on January 2004

Correction: Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines.

scientific article published on 10 May 2013

Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot

scientific article

Deep Question Answering for protein annotation

scientific article

Design of a decentralized reusable research database architecture to support data acquisition in large research projects.

scientific article

Development and Evaluation of a Case-Based Retrieval Service

scientific article published on January 2017

Development and tuning of an original search engine for patent libraries in medicinal chemistry.

scientific article

Electronic processing of informed consents in a global pharmaceutical company environment

scientific article published in January 2014

Extracting key sentences with latent argumentative structuring.

scientific article published in January 2005

Findings from the yearbook 2010 section on decision support systems.

scientific article

From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding.

scientific article

GOAssay: from Gene Ontology to Assays IDentifiers – Towards Automatic Functional Annotation of PubChem BioAssays

GOAssay: from Gene Ontology to Assays IDentifiers – Towards Automatic Functional Annotation of PubChem BioAssays

article

Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction

scientific article

Health search engine with e-document analysis for reliable search results.

scientific article published on 27 December 2005

Improving average ranking precision in user searches for biomedical research datasets

scientific article published in January 2017

Improving data and knowledge management to better integrate health care and research.

scientific article

Interoperability driven integration of biomedical data sources.

scientific article

Introducing meta-services for biomedical information extraction

scientific article published on September 2008

KART, a knowledge authoring and refinement tool for clinical guidelines development.

scientific article published on 29 June 2011

Liberate the power of biodiversity literature as FAIR digital objects

scientific article published on 30 April 2024

MEDTAG: tag-like semantics for medical document indexing

scientific article

Machine Learning for Automatic Encoding of French Electronic Medical Records: Is More Data Better?

scientific article published on 01 June 2020

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases.

scientific article

Mapping proteins to disease terminologies: from UniProt to MeSH

scientific article

Medical document anonymization with a semantic lexicon.

scientific article

Methodology to ease the construction of a terminology of problems

scientific article published on 10 October 2005

ORBDA: An openEHR benchmark dataset for performance assessment of electronic health record servers

scientific article published on 2 January 2018

Overview of BioCreative II gene normalization

scientific article published on September 2008

Overview of the BioCreative VI text-mining services for Kinome Curation Track

scientific article published on 01 January 2018

Overview of the gene ontology task at BioCreative IV

scientific article

Pathogens and gene product normalization in the biomedical literature.

scientific article published on January 2012

QA-driven guidelines generation for bacteriotherapy.

scientific article

Recent advances in natural language processing for biomedical applications

scientific article published on 31 August 2005

Recommendations for interoperability among infrastructures

scientific article published on 14 October 2022

Reconciliation of ontology and terminology to cope with linguistics.

scientific article published on January 2007

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data.

scientific article published on January 2016

Suicide Notes: Their Utility in Understanding the Motivations Behind Suicide and Preventing Future Ones

scientific article published on 13 November 2018

Tagging medical texts: a rule-based experiment.

scientific article published on January 2000

Text Mining to Support Gene Ontology Curation and Vice Versa.

scientific article published on January 2017

Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology

scientific article published on 01 June 2020

The COMBREX project: design, methodology, and initial results

scientific article

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

scientific article (publication date: 4 January 2016)

The future of natural language processing for biomedical applications.

scientific article published on December 2002

The gene normalization task in BioCreative III

scientific article (publication date: 3 October 2011)

Towards "Biodiversity PMC"

scientific article published in 2023

Towards a unified medical lexicon for French

scientific article published in January 2003

Triage by ranking to support the curation of protein interactions

scientific article

UMLF: a Unified Medical Lexicon for French.

scientific article published on January 2003

UMLF: a unified medical lexicon for French

article

UPCLASS: a deep learning-based classifier for UniProtKB entry publications

scientific article published on 01 January 2020

Use of controlled vocabularies to improve biomedical information retrieval tasks

scientific article published on January 2013

Using argumentation to extract key sentences from biomedical abstracts

scientific article

Using argumentation to retrieve articles with similar citations: an inquiry into improving related articles search in the MEDLINE digital library

scientific article published on 13 September 2005

Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database ⬇️

scientific article published on 05 December 2012

Using discourse analysis to improve text categorization in MEDLINE.

scientific article

Using lexical disambiguation and named-entity recognition to improve spelling correction in the electronic patient record.

scientific article published on September 2003

Using multimodal mining to drive clinical guidelines development

scientific article published in January 2011

Utilization of ontology look-up services in information retrieval for biomedical literature

scientific article published on January 2013

neXtA5: accelerating annotation of articles via automated approaches in neXtProt

scientific article

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