List of works by Brian D. Athey

2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

scientific article

A bioinformatics analysis of the cell line nomenclature

scientific article published on 10 October 2008

AN ACTIVE VISUAL SEARCH INTERFACE FOR MEDLINE

An 'Honest Broker' mechanism to maintain privacy for patient care and academic medical research

scientific article published on November 2006

An active visual search interface for Medline.

scientific article published in January 2007

Analysis of time-gated imaging through scattering media by a Fourier optics approach.

scientific article published in March 2002

CLO: The cell line ontology

scientific article

Challenges in presenting high dimensional data to aid in triage in the DARPA virtual soldier project.

scientific article

Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length.

scientific article

ConceptGen: a gene set enrichment and gene set relation mapping tool

scientific article

Correlations among angular wave component amplitudes in elastic multiple-scattering random media

scientific article

Cross-Domain Neurobiology Data Integration and Exploration

Cross-domain neurobiology data integration and exploration

scientific article

Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG).

scientific article published on 21 January 2008

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

scientific article

F-actin, tubulin and spectrin in the organ of Corti: comparative distribution in different cell types and mammalian species.

scientific article published on June 1994

Final Report of the Meeting “Modeling & Simulation in Medicine: Towards an Integrated Framework”: July 20-21, 2000, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA

article

Final report of the meeting "modeling & simulation in medicine: towards an integrated framework". July 20-21, 2000, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA

scientific article published on 01 January 2001

GSearcher: agile attribute querying for biological networks

scientific article

Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray. ⬇️

scientific article published on 02 February 2004

High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics

scientific article

Integrated metabolome and transcriptome analysis of the NCI60 dataset

scientific article

Interactive Design Strategy for a Multi-Functional PAMAM Dendrimer-Based Nano-Therapeutic Using Computational Models and Experimental Analysis

scientific article

Investigation of ultrafast time gating by spatial filtering

scientific article published on 01 May 2001

MetDisease--connecting metabolites to diseases via literature

scientific article

Metab2MeSH: annotating compounds with medical subject headings

scientific article

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.

scientific article

Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks

scientific article

MiSearch adaptive pubMed search tool

scientific article

Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together

scientific article

Michigan molecular interactions r2: from interacting proteins to pathways

scientific article

Mining the topography and dynamics of the 4D Nucleome to identify novel CNS drug pathways

scientific article published on 3 April 2017

Monocyte-endothelial adhesion in chronic rheumatoid arthritis. In situ detection of selectin and integrin-dependent interactions

scientific article published on June 1993

Needs for an expanded ontology-based classification of adverse drug reactions and related mechanisms.

scientific article published on June 2012

New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites

scientific article

Noise suppression and optical sectioning by non-phase-recording interferometry.

scientific article published in August 2004

Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines

scientific article

Open Biomedical Ontology-based Medline exploration

scientific article

Optical sectioning by holographic coherence imaging: a generalized analysis

scientific article published on 01 February 2003

Researchers' needs for resource discovery and collaboration tools: a qualitative investigation of translational scientists

scientific article

SNP Function Portal: a web database for exploring the function implication of SNP alleles

scholarly article by P. Wang et al published 15 July 2006 in Bioinformatics

Simplifying access to a Clinical Data Repository using schema summarization.

scientific article

Structure of the reticular lamina and repair after noise injury.

scientific article published on January 1993

Subcellular optochemical nanobiosensors: probes encapsulated by biologically localised embedding (PEBBLEs)

Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs

scientific article

Synthetic aperture, holographic, chirped confocal process

Telemedicine/telehealth: an international perspective. Telemedicine and medical/health education.

scientific article published in January 2002

The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research

scientific article

The Cell Line Ontology and its use in tagging cell line names in biomedical text.

scientific article published on 11 October 2007

The NIH National Center for Integrative Biomedical Informatics (NCIBI).

scientific article published on 19 November 2011

The University of Michigan Honest Broker: a Web-based service for clinical and translational research and practice

scientific article (publication date: 2009)

The gputools package enables GPU computing in R

scientific article

Unified translation repression mechanism for microRNAs and upstream AUGs

scientific article

VO: Vaccine Ontology

VO: Vaccine Ontology

VO: Vaccine Ontology

VO: Vaccine Ontology

iTools: a framework for classification, categorization and integration of computational biology resources

scientific article published in 2008

miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST.

scientific article

tranSMART: An Open Source and Community-Driven Informatics and Data Sharing Platform for Clinical and Translational Research

scientific article

“Keeping up with Bioinformatics and Computational Biology as applied to biomedicine—Where has it been? Where is it going?”

scholarly article published March 2009

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